Crosstalk between gut and brain in Alzheimer's disease: the role of gut microbiota modulation strategies

U Shabbir, MS Arshad, A Sameen, DH Oh - Nutrients, 2021 - mdpi.com
The gut microbiota (GM) represents a diverse and dynamic population of microorganisms
and about 100 trillion symbiotic microbial cells that dwell in the gastrointestinal tract. Studies …

Metagenomic sequencing for microbial DNA in human samples: emerging technological advances

Y Shi, G Wang, HCH Lau, J Yu - International journal of molecular …, 2022 - mdpi.com
Whole genome metagenomic sequencing is a powerful platform enabling the simultaneous
identification of all genes from entirely different kingdoms of organisms in a complex sample …

Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach

C Feehily, IJ O'Neill, CJ Walsh, RL Moore… - Nature …, 2023 - nature.com
A significant proportion of the infant gut microbiome is considered to be acquired from the
mother during and after birth. Thus begins a lifelong and dynamic relationship with microbes …

Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using Oxford Nanopore's adaptive sequencing

M Marquet, J Zöllkau, J Pastuschek, A Viehweger… - Scientific reports, 2022 - nature.com
Metagenomic sequencing is promising for clinical applications to study microbial
composition concerning disease or patient outcomes. Alterations of the vaginal microbiome …

Next-generation food research: Use of meta-omic approaches for characterizing microbial communities along the food chain

M Yap, D Ercolini, A Álvarez-Ordóñez… - Annual Review of …, 2022 - annualreviews.org
Microorganisms exist along the food chain and impact the quality and safety of foods in both
positive and negative ways. Identifying and understanding the behavior of these microbial …

Novel virus identification through metagenomics: a systematic review

C Bassi, P Guerriero, M Pierantoni, E Callegari… - Life, 2022 - mdpi.com
Metagenomic Next Generation Sequencing (mNGS) allows the evaluation of complex
microbial communities, avoiding isolation and cultivation of each microbial species, and …

[HTML][HTML] Metagenomics approaches for improving food safety: a review

C Billington, JM Kingsbury, L Rivas - Journal of food Protection, 2022 - Elsevier
Advancements in next-generation sequencing technology have dramatically reduced the
cost and increased the ease of microbial whole genome sequencing. This approach is …

The application of metagenomics to study microbial communities and develop desirable traits in fermented foods

M Srinivas, O O'Sullivan, PD Cotter, D Sinderen… - Foods, 2022 - mdpi.com
The microbial communities present within fermented foods are diverse and dynamic,
producing a variety of metabolites responsible for the fermentation processes, imparting …

Microbial DNA extraction of high-host content and low biomass samples: Optimized protocol for nasopharynx metagenomic studies

P Rajar, A Dhariwal, G Salvadori, R Junges… - Frontiers in …, 2022 - frontiersin.org
Introduction Low microbial biomass and high human DNA content in nasopharyngeal
aspirate samples hinder comprehensive characterization of microbiota and resistome. We …

A review of the resistome within the digestive tract of livestock

T Ma, TA McAllister, LL Guan - Journal of animal science and …, 2021 - Springer
Antimicrobials have been widely used to prevent and treat infectious diseases and promote
growth in food-production animals. However, the occurrence of antimicrobial resistance …