Heterogeneity in protein folding and unfolding reactions

S Bhatia, JB Udgaonkar - Chemical Reviews, 2022 - ACS Publications
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …

Functional principles and regulation of molecular chaperones

V Dahiya, J Buchner - Advances in protein chemistry and structural biology, 2019 - Elsevier
To be able to perform their biological function, a protein needs to be correctly folded into its
three dimensional structure. The protein folding process is spontaneous and does not …

How cooperative are protein folding and unfolding transitions?

P Malhotra, JB Udgaonkar - Protein Science, 2016 - Wiley Online Library
A thermodynamically and kinetically simple picture of protein folding envisages only two
states, native (N) and unfolded (U), separated by a single activation free energy barrier, and …

Molecular mechanism of the misfolding and oligomerization of the prion protein: current understanding and its implications

J Singh, JB Udgaonkar - Biochemistry, 2015 - ACS Publications
Prion diseases, also known as transmissible spongiform encephalopathies, make up a
group of fatal neurodegenerative disorders linked with the misfolding and aggregation of the …

Understanding protein domain-swapping using structure-based models of protein folding

NM Mascarenhas, S Gosavi - Progress in biophysics and molecular biology, 2017 - Elsevier
In domain-swapping, two or more identical protein monomers exchange structural elements
and fold into dimers or multimers whose units are structurally similar to the original …

The osmolyte TMAO modulates protein folding cooperativity by altering global protein stability

PN Jethva, JB Udgaonkar - Biochemistry, 2018 - ACS Publications
The folding of many globular proteins from the unfolded (U) to the native (N) state appears to
be describable by a two-state N↔ U model, which has led to the general belief that protein …

Differentiating between the sequence of structural events on alternative pathways of folding of a heterodimeric protein

R Bhattacharjee, JB Udgaonkar - Protein Science, 2022 - Wiley Online Library
Distinguishing between competing pathways of folding of a protein, on the basis of how they
differ in their progress of structure acquisition, remains an important challenge in protein …

A three-state mechanism for trifluoroethanol denaturation of an intrinsically disordered protein (IDP)

M Hossain, N Huda, AK Bhuyan - The Journal of Biochemistry, 2023 - academic.oup.com
Relating the amino acid composition and sequence to chain folding and binding
preferences of intrinsically disordered proteins (IDPs) has emerged as a huge challenge …

Tuning cooperativity on the free energy landscape of protein folding

P Malhotra, JB Udgaonkar - Biochemistry, 2015 - ACS Publications
Understanding the origin of the cooperativity seemingly inherent in a folding or unfolding
reaction has been a major challenge. In particular, the relationship between folding …

Thermodynamics and kinetics of single-chain monellin folding with structural insights into specific collapse in the denatured state ensemble

H Maity, G Reddy - Journal of Molecular Biology, 2018 - Elsevier
Proteins, which behave as random coils in high denaturant concentrations undergo collapse
transition similar to polymers on denaturant dilution. We study collapse in the denatured …