Reference genes in real-time PCR

B Kozera, M Rapacz - Journal of applied genetics, 2013 - Springer
This paper aims to discuss various aspects of the use of reference genes in qPCR technique
used in the thousands of present studies. Most frequently, these are housekeeping genes …

Human housekeeping genes, revisited

E Eisenberg, EY Levanon - TRENDS in Genetics, 2013 - cell.com
Housekeeping genes are involved in basic cell maintenance and, therefore, are expected to
maintain constant expression levels in all cells and conditions. Identification of these genes …

Mapping the mouse cell atlas by microwell-seq

X Han, R Wang, Y Zhou, L Fei, H Sun, S Lai… - Cell, 2018 - cell.com
Single-cell RNA sequencing (scRNA-seq) technologies are poised to reshape the current
cell-type classification system. However, a transcriptome-based single-cell atlas has not …

The Brazilian Zika virus strain causes birth defects in experimental models

FR Cugola, IR Fernandes, FB Russo, BC Freitas… - Nature, 2016 - nature.com
Zika virus (ZIKV) is an arbovirus belonging to the genus Flavivirus (family Flaviviridae) and
was first described in 1947 in Uganda following blood analyses of sentinel Rhesus …

Inhibition of the glucose transporter SGLT2 with dapagliflozin in pancreatic alpha cells triggers glucagon secretion

C Bonner, J Kerr-Conte, V Gmyr, G Queniat… - Nature medicine, 2015 - nature.com
Abstract Type 2 diabetes (T2D) is characterized by chronic hyperglycemia resulting from a
deficiency in insulin signaling, because of insulin resistance and/or defects in insulin …

WAPL maintains a cohesin loading cycle to preserve cell-type-specific distal gene regulation

NQ Liu, M Maresca, T van den Brand, L Braccioli… - Nature …, 2021 - nature.com
The cohesin complex has an essential role in maintaining genome organization. However,
its role in gene regulation remains largely unresolved. Here we report that the cohesin …

HRT Atlas v1. 0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets

BW Hounkpe, F Chenou, F de Lima… - Nucleic acids …, 2021 - academic.oup.com
Housekeeping (HK) genes are constitutively expressed genes that are required for the
maintenance of basic cellular functions. Despite their importance in the calibration of gene …

A scaling normalization method for differential expression analysis of RNA-seq data

MD Robinson, A Oshlack - Genome biology, 2010 - Springer
The fine detail provided by sequencing-based transcriptome surveys suggests that RNA-seq
is likely to become the platform of choice for interrogating steady state RNA. In order to …

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

JC Marioni, CE Mason, SM Mane, M Stephens… - Genome …, 2008 - genome.cshlp.org
Ultra-high-throughput sequencing is emerging as an attractive alternative to microarrays for
genotyping, analysis of methylation patterns, and identification of transcription factor binding …

Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia

SN Sansom, N Shikama-Dorn, S Zhanybekova… - Genome …, 2014 - genome.cshlp.org
Promiscuous gene expression (PGE) by thymic epithelial cells (TEC) is essential for
generating a diverse T cell antigen receptor repertoire tolerant to self-antigens, and thus for …