Rare by natural selection: Disulfide-bonded supramolecular antimicrobial peptides

Y Engelberg, P Ragonis-Bachar, M Landau - Biomacromolecules, 2022 - ACS Publications
Human LL-3717–29 is an antimicrobial peptide forming thermostable supramolecular fibrils
that surround bacterial cells. The crystal structure of LL-3717–29 bearing an I24C …

Thermodynamics of exponential Kolmogorov–Nagumo averages

PA Morales, J Korbel, FE Rosas - New Journal of Physics, 2023 - iopscience.iop.org
This paper investigates generalized thermodynamic relationships in physical systems where
relevant macroscopic variables are determined by the exponential Kolmogorov–Nagumo …

Nonideality factor in the thermodynamic analysis of real polymer solutions

NA Makarevich - Polymer Science, Series A, 2022 - Springer
The generalized nonideality factor of systems g is introduced in Rényi and Tsallis
information entropy equations describing self-organized structures of high molecular weight …

Stochastic thermodynamics and fluctuation theorems for non-linear systems

J Korbel, DH Wolpert - New Journal of Physics, 2021 - iopscience.iop.org
We extend stochastic thermodynamics by relaxing the two assumptions that the Markovian
dynamics must be linear and that the equilibrium distribution must be a Boltzmann …

On Thermodynamic Information

B Miao, H Qian, YS Wu - arXiv preprint arXiv:2312.03454, 2023 - arxiv.org
Information based thermodynamic logic is revisited. It consists of two parts: Part A applies
the modern theory of probability in which an arbitrary convex function\phi is employed as an …

Phase transition in a stochastic geometry model with applications to statistical mechanics

OK Kazemi, A Pourdarvish… - Mathematical Methods in …, 2022 - Wiley Online Library
We study the connected components of the stochastic geometry model on Poisson points
which is obtained by connecting points with a probability that depends on their relative …

[PDF][PDF] The Thermodynamics of a Stochastic Geometry Model with Applications to Non-Extensive Statistics

OK Kazemi, A Pourdarvish… - Journal of Stochastic …, 2022 - repository.lsu.edu
We use the escort distribution instead of the original distribution for calculating the moment
generating function and the physical quantities in non-extensive statistical mechanics …

Understanding the discrete genetic toggle switch phenomena using a discrete 'nullcline'construct inspired by the Markov chain tree theorem

A Petrides, G Vinnicombe - 2017 IEEE 56th Annual Conference …, 2017 - ieeexplore.ieee.org
Nullclines provide a convenient way of characterising and understanding the behaviour of
low dimensional nonlinear deterministic systems, but are, perhaps not unsurprisingly, a poor …

Advances in the stochastic and deterministic analysis of multistable biochemical networks

A Petrides - 2018 - repository.cam.ac.uk
This dissertation is concerned with the potential multistability of protein concentrations in the
cell that can arise in biochemical networks. That is, situations where one, or a family of …