Transcription regulation and animal diversity

M Levine, R Tjian - Nature, 2003 - nature.com
Whole-genome sequence assemblies are now available for seven different animals,
including nematode worms, mice and humans. Comparative genome analyses reveal a …

A new heart for a new head in vertebrate cardiopharyngeal evolution

R Diogo, RG Kelly, L Christiaen, M Levine… - Nature, 2015 - nature.com
It has been more than 30 years since the publication of the new head hypothesis, which
proposed that the vertebrate head is an evolutionary novelty resulting from the emergence of …

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

P Dehal, Y Satou, RK Campbell, J Chapman… - Science, 2002 - science.org
The first chordates appear in the fossil record at the time of the Cambrian explosion, nearly
550 million years ago. The modern ascidian tadpole represents a plausible approximation to …

The ascidian tadpole larva: comparative molecular development and genomics

N Satoh - Nature Reviews Genetics, 2003 - nature.com
Evolution is of interest not only to developmental biology but also to genetics and genomics.
We are witnessing a new era in which evolution, development, genetics and genomics are …

Genomic repertoires of DNA-binding transcription factors across the tree of life

V Charoensawan, D Wilson… - Nucleic acids …, 2010 - academic.oup.com
Sequence-specific transcription factors (TFs) are important to genetic regulation in all
organisms because they recognize and directly bind to regulatory regions on DNA. Here, we …

Ciona intestinalis: an emerging model for whole-genome analyses

N Satoh, Y Satou, B Davidson, M Levine - TRENDS in Genetics, 2003 - cell.com
The tadpole larvae of the ascidian Ciona intestinalis possess the most simplified chordate
body plan. Analysis of the Ciona draft genome indicates that the∼ 153–159Mb genome …

Regulatory roles of conserved intergenic domains in vertebrate Dlx bigene clusters

N Ghanem, O Jarinova, A Amores, Q Long… - Genome …, 2003 - genome.cshlp.org
Dlx homeobox genes of vertebrates are generally arranged as three bigene clusters on
distinct chromosomes. The Dlx1/Dlx2, Dlx5/Dlx6, and Dlx3/Dlx7 clusters likely originate from …

Using transgenic reporter assays to functionally characterize enhancers in animals

EZ Kvon - Genomics, 2015 - Elsevier
Enhancers or cis-regulatory modules play an instructive role in regulating gene expression
during animal development and in response to the environment. Despite their importance …

Formation of the ascidian epidermal sensory neurons: insights into the origin of the chordate peripheral nervous system

A Pasini, A Amiel, U Rothbächer, A Roure… - PLoS …, 2006 - journals.plos.org
The vertebrate peripheral nervous system (PNS) originates from neural crest and placodes.
While its developmental origin is the object of intense studies, little is known concerning its …

Cereblon influences the timing of muscle differentiation in Ciona tadpoles

J Long, A Mariossi, C Cao, Z Mo… - Proceedings of the …, 2023 - National Acad Sciences
Thalidomide has a dark history as a teratogen, but in recent years, its derivates have been
shown to function as potent chemotherapeutic agents. These drugs bind cereblon (CRBN) …