Using MetaboAnalyst 3.0 for comprehensive metabolomics data analysis

J Xia, DS Wishart - Current protocols in bioinformatics, 2016 - Wiley Online Library
Abstract MetaboAnalyst (http://www. metaboanalyst. ca) is a comprehensive Web application
for metabolomic data analysis and interpretation. MetaboAnalyst handles most of the …

A guideline to univariate statistical analysis for LC/MS-based untargeted metabolomics-derived data

M Vinaixa, S Samino, I Saez, J Duran, JJ Guinovart… - Metabolites, 2012 - mdpi.com
Several metabolomic software programs provide methods for peak picking, retention time
alignment and quantification of metabolite features in LC/MS-based metabolomics …

Using MetaboAnalyst 4.0 for comprehensive and integrative metabolomics data analysis

J Chong, DS Wishart, J Xia - Current protocols in bioinformatics, 2019 - Wiley Online Library
Abstract MetaboAnalyst (https://www. metaboanalyst. ca) is an easy‐to‐use web‐based tool
suite for comprehensive metabolomic data analysis, interpretation, and integration with other …

MetaboAnalyst 3.0—making metabolomics more meaningful

J Xia, IV Sinelnikov, B Han, DS Wishart - Nucleic acids research, 2015 - academic.oup.com
Abstract MetaboAnalyst (www. metaboanalyst. ca) is a web server designed to permit
comprehensive metabolomic data analysis, visualization and interpretation. It supports a …

metaX: a flexible and comprehensive software for processing metabolomics data

B Wen, Z Mei, C Zeng, S Liu - BMC bioinformatics, 2017 - Springer
Background Non-targeted metabolomics based on mass spectrometry enables high-
throughput profiling of the metabolites in a biological sample. The large amount of data …

Systematic error removal using random forest for normalizing large-scale untargeted lipidomics data

S Fan, T Kind, T Cajka, SL Hazen, WHW Tang… - Analytical …, 2019 - ACS Publications
Large-scale untargeted lipidomics experiments involve the measurement of hundreds to
thousands of samples. Such data sets are usually acquired on one instrument over days or …

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

PAC 't Hoen, MR Friedländer, J Almlöf… - Nature …, 2013 - nature.com
RNA sequencing is an increasingly popular technology for genome-wide analysis of
transcript sequence and abundance. However, understanding of the sources of technical …

Interacting quantum atoms—a review

JM Guevara-Vela, E Francisco, T Rocha-Rinza… - Molecules, 2020 - mdpi.com
The aim of this review is threefold. On the one hand, we intend it to serve as a gentle
introduction to the Interacting Quantum Atoms (IQA) methodology for those unfamiliar with it …

Metabolomics in the study of retinal health and disease

I Laíns, M Gantner, S Murinello, JA Lasky-Su… - Progress in retinal and …, 2019 - Elsevier
Metabolomics is the qualitative and quantitative assessment of the metabolites (small
molecules< 1.5 kDa) in body fluids. The metabolites are the downstream of the genetic …

Power analysis and sample size determination in metabolic phenotyping

BJ Blaise, G Correia, A Tin, JH Young… - Analytical …, 2016 - ACS Publications
Estimation of statistical power and sample size is a key aspect of experimental design.
However, in metabolic phenotyping, there is currently no accepted approach for these tasks …