Enhancing activity prediction models in drug discovery with the ability to understand human language

P Seidl, A Vall, S Hochreiter… - … on Machine Learning, 2023 - proceedings.mlr.press
Activity and property prediction models are the central workhorses in drug discovery and
materials sciences, but currently, they have to be trained or fine-tuned for new tasks. Without …

GOAT: A global transformer on large-scale graphs

K Kong, J Chen, J Kirchenbauer, R Ni… - International …, 2023 - proceedings.mlr.press
Graph transformers have been competitive on graph classification tasks, but they fail to
outperform Graph Neural Networks (GNNs) on node classification, which is a common task …

TransFoxMol: predicting molecular property with focused attention

J Gao, Z Shen, Y Xie, J Lu, Y Lu, S Chen… - Briefings in …, 2023 - academic.oup.com
Predicting the biological properties of molecules is crucial in computer-aided drug
development, yet it's often impeded by data scarcity and imbalance in many practical …

Molformer: Motif-based transformer on 3d heterogeneous molecular graphs

F Wu, D Radev, SZ Li - Proceedings of the AAAI Conference on Artificial …, 2023 - ojs.aaai.org
Procuring expressive molecular representations underpins AI-driven molecule design and
scientific discovery. The research mainly focuses on atom-level homogeneous molecular …

Geometric transformer with interatomic positional encoding

Y Wang, S Li, T Wang, B Shao… - Advances in Neural …, 2024 - proceedings.neurips.cc
The widespread adoption of Transformer architectures in various data modalities has
opened new avenues for the applications in molecular modeling. Nevertheless, it remains …

Application of Transformers in Cheminformatics

KD Luong, A Singh - Journal of Chemical Information and …, 2024 - ACS Publications
By accelerating time-consuming processes with high efficiency, computing has become an
essential part of many modern chemical pipelines. Machine learning is a class of computing …

Language models in molecular discovery

N Janakarajan, T Erdmann, S Swaminathan… - arXiv preprint arXiv …, 2023 - arxiv.org
The success of language models, especially transformer-based architectures, has trickled
into other domains giving rise to" scientific language models" that operate on small …

A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery

Y Zhang, X Chen, B Jin, S Wang, S Ji, W Wang… - arXiv preprint arXiv …, 2024 - arxiv.org
In many scientific fields, large language models (LLMs) have revolutionized the way with
which text and other modalities of data (eg, molecules and proteins) are dealt, achieving …

Geometric transformer for end-to-end molecule properties prediction

Y Choukroun, L Wolf - arXiv preprint arXiv:2110.13721, 2021 - arxiv.org
Transformers have become methods of choice in many applications thanks to their ability to
represent complex interactions between elements. However, extending the Transformer …

Text Sentiment Analysis of Douban Film Short Comments Based on BERT-CNN-BiLSTM-Att Model

A He, M Abisado - IEEE Access, 2024 - ieeexplore.ieee.org
To solve the problems of polysemy and feature extraction in the text sentiment analysis
process, a BERT-CNN-BiLSTM-Att hybrid model has been proposed for text sentiment …