Epistasis and pleiotropy‐induced variation for plant breeding

SL Dwivedi, P Heslop‐Harrison, J Amas… - Plant Biotechnology …, 2024 - Wiley Online Library
Epistasis refers to nonallelic interaction between genes that cause bias in estimates of
genetic parameters for a phenotype with interactions of two or more genes affecting the …

A novel multitasking ant colony optimization method for detecting multiorder SNP interactions

S Tuo, C Li, F Liu, YL Zhu, TR Chen, ZY Feng… - Interdisciplinary …, 2022 - Springer
Motivation Linear or nonlinear interactions of multiple single-nucleotide polymorphisms
(SNPs) play an important role in understanding the genetic basis of complex human …

SEEI: spherical evolution with feedback mechanism for identifying epistatic interactions

D Tang, Y Mao, J Zhao, J Yang, S Li, F Ren, J Zheng - BMC genomics, 2024 - Springer
Abstract Background Detecting epistatic interactions (EIs) involves the exploration of
associations among single nucleotide polymorphisms (SNPs) and complex diseases, which …

Epimc: detecting epistatic interactions using multiple clusterings

J Wang, H Zhang, W Ren, M Guo… - IEEE/ACM Transactions …, 2021 - ieeexplore.ieee.org
Detecting single nucleotide polymorphisms (SNPs) interactions is crucial to identify
susceptibility genes associated with complex human diseases in genome-wide association …

Multi-Objective Artificial Bee Colony Algorithm Based on Scale-Free Network for Epistasis Detection

Y Gu, Y Sun, J Shang, F Li, B Guan, JX Liu - Genes, 2022 - mdpi.com
In genome-wide association studies, epistasis detection is of great significance for the
occurrence and diagnosis of complex human diseases, but it also faces challenges such as …

[HTML][HTML] A SIMD algorithm for the detection of epistatic interactions of any order

C Ponte-Fernández, J González-Domínguez… - Future Generation …, 2022 - Elsevier
Epistasis is a phenomenon in which a phenotype outcome is determined by the interaction
of genetic variation at two or more loci and it cannot be attributed to the additive combination …

A GPU-based approach for detecting genome-wide SNP-SNP interactions of quantitative trait in ADNI cohorts

Q Zhang, H Liu, L Ao, H Liang… - 2022 IEEE International …, 2022 - ieeexplore.ieee.org
Genome-wide association studies (GWAS) have proven that thousands of single nucleotide
polymorphisms (SNP) are closely related to complex disease. As a neurodegenerative …

SpEpistasis: A sparse approach for three-way epistasis detection

D Marques, L Sousa, A Ilic - Journal of Parallel and Distributed Computing, 2025 - Elsevier
Epistasis detection is a fundamental application in the areas of bioinformatics and
biomedicine, providing important insights regarding the relationship between the human …

The Spherical Evolutionary Multi-Objective (SEMO) Algorithm for Identifying Disease Multi-Locus SNP Interactions

F Ren, S Li, Z Wen, Y Liu, D Tang - Genes, 2023 - mdpi.com
Single-nucleotide polymorphisms (SNPs), as disease-related biogenetic markers, are
crucial in elucidating complex disease susceptibility and pathogenesis. Due to …

Fiuncho: a program for any-order epistasis detection in CPU clusters

C Ponte-Fernández, J González-Domínguez… - The Journal of …, 2022 - Springer
Epistasis can be defined as the statistical interaction of genes during the expression of a
phenotype. It is believed that it plays a fundamental role in gene expression, as individual …