Human organoids: New strategies and methods for analyzing human development and disease

NS Corsini, JA Knoblich - Cell, 2022 - cell.com
For decades, insight into fundamental principles of human biology and disease has been
obtained primarily by experiments in animal models. While this has allowed researchers to …

Connecting past and present: single-cell lineage tracing

C Chen, Y Liao, G Peng - Protein & Cell, 2022 - academic.oup.com
Central to the core principle of cell theory, depicting cells' history, state and fate is a
fundamental goal in modern biology. By leveraging clonal analysis and single-cell RNA-seq …

A stepwise mode of TGFβ-SMAD signaling and DNA methylation regulates naïve-to-primed pluripotency and differentiation

B Zhao, X Yu, J Shi, S Ma, S Li, H Shi, S Xia… - Nature …, 2024 - nature.com
The formation of transcription regulatory complexes by the association of Smad4 with
Smad2 and Smad3 (Smad2/3) is crucial in the canonical TGFβ pathway. Although the …

The role of single-cell genomics in human genetics

VKA Sreenivasan, S Balachandran… - Journal of medical …, 2022 - jmg.bmj.com
Single-cell sequencing is a powerful approach that can detect genetic alterations and their
phenotypic consequences in the context of human development, with cellular resolution …

An integrative proteomics method identifies a regulator of translation during stem cell maintenance and differentiation

P Sabatier, CM Beusch, AA Saei, M Aoun… - Nature …, 2021 - nature.com
Detailed characterization of cell type transitions is essential for cell biology in general and
particularly for the development of stem cell-based therapies in regenerative medicine. To …

DNA methylation restricts coordinated germline and neural fates in embryonic stem cell differentiation

M Schulz, A Teissandier… - Nature Structural & …, 2024 - nature.com
As embryonic stem cells (ESCs) transition from naive to primed pluripotency during early
mammalian development, they acquire high DNA methylation levels. During this transition …

Single-cell transcriptomic dissection of the toxic impact of di (2-ethylhexyl) phthalate on immature testicular development at the neonatal stage

Y Wei, Y Hong, L Yang, J Wang, T Zhao… - Food and Chemical …, 2023 - Elsevier
Abstract Di (2-ethylhexyl) phthalate (DEHP) early exposure leads to immature testicular
injury, and we aimed to utilize single-cell RNA (scRNA) sequencing to comprehensively …

Gene expression in organoids: an expanding horizon

A Smirnov, G Melino, E Candi - Biology Direct, 2023 - Springer
Recent development of human three-dimensional organoid cultures has opened new doors
and opportunities ranging from modelling human development in vitro to personalised …

Esrrb is a cell-cycle-dependent associated factor balancing pluripotency and XEN differentiation

SH Levy, SF Cohen, L Arnon, S Lahav, M Awawdy… - Stem Cell Reports, 2022 - cell.com
Cell cycle and differentiation decisions are linked; however, the underlying principles that
drive these decisions are unclear. Here, we combined cell-cycle reporter system and single …

[HTML][HTML] Single-cell molecular barcoding to decode multimodal information defining cell states

IS Kim - Molecules and cells, 2023 - Elsevier
Single-cell research has provided a breakthrough in biology to understand heterogeneous
cell groups, such as tissues and organs, in development and disease. Molecular barcoding …