Synthetic living materials in cancer biology

SR Peyton, LW Chow, SD Finley, ANF Versypt… - Nature Reviews …, 2023 - nature.com
Living materials, which are made either of or by living cells, or are synthetic materials with
programmable elements catered to cells, are environmentally responsive and can self …

Mathematical Modeling Support for Lung Cancer Therapy—A Short Review

J Smieja - International Journal of Molecular Sciences, 2023 - mdpi.com
The paper presents a review of models that can be used to describe dynamics of lung
cancer growth and its response to treatment at both cell population and intracellular …

A rule-based multiscale model of hepatic stellate cell plasticity: Critical role of the inactivation loop in fibrosis progression

M Bouguéon, V Legagneux, O Hazard… - PLoS Computational …, 2024 - journals.plos.org
Hepatic stellate cells (HSC) are the source of extracellular matrix (ECM) whose
overproduction leads to fibrosis, a condition that impairs liver functions in chronic liver …

Development and analysis of multiscale models for tuberculosis: from molecules to populations

P Nanda, M Budak, CT Michael, K Krupinsky… - Predicting Pandemics in …, 2024 - Springer
Although infectious disease dynamics are often analyzed at the macroscale, increasing
numbers of drug-resistant infections highlight the importance of within-host modeling that …

Building multiscale models with PhysiBoSS, an agent-based modeling tool

M Ruscone, A Checcoli, R Heiland… - Briefings in …, 2024 - academic.oup.com
Multiscale models provide a unique tool for analyzing complex processes that study events
occurring at different scales across space and time. In the context of biological systems, such …

Multiscale computational model predicts how environmental changes and treatments affect microvascular remodeling in fibrotic disease

J Leonard-Duke, SMJ Agro, DJ Csordas… - PNAS …, 2025 - academic.oup.com
Investigating the molecular, cellular, and tissue-level changes caused by disease, and the
effects of pharmacological treatments across these biological scales, necessitates the use of …

Logic-Based Modeling of Inflammatory Macrophage Crosstalk with Glomerular Endothelial Cells in Diabetic Kidney Disease

K Patidar, ANF Versypt - bioRxiv, 2023 - biorxiv.org
Diabetic kidney disease is a complication in 1 out of 3 patients with diabetes. Aberrant
glucose metabolism in diabetes leads to an immune response causing inflammation and to …

A Type 2 Diabetes Simulator for Multiscale Glycemic Dynamics

AN Shahidehpour - 2024 - search.proquest.com
Diabetes mellitus affects more than 30 million people in the United States and more than
400 million people worldwide. It is estimated that 90-95% of these people have type 2 …

A review of mathematical modeling of bone remodeling from a systems biology perspective

CV Cook, AM Lighty, BJ Smith… - Frontiers in Systems …, 2024 - frontiersin.org
Bone remodeling is an essential, delicately balanced physiological process of coordinated
activity of bone cells that remove and deposit new bone tissue in the adult skeleton. Due to …

[HTML][HTML] Computational Systems and Network Biology Perspective: Understanding Klebsiella pneumoniae Infection Mechanisms

M Mazaya, NSD Panjaitan, AK Hayati - The Microbe, 2024 - Elsevier
Klebsiella pneumoniae (K. pneumoniae) is a pathogen that has been identified as the
leading cause of pneumonia and septicemia worldwide, compounded by its multi-drug …