Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters
Within aquaculture industries, selection based on genomic information (genomic selection)
has the profound potential to change genetic improvement programs and production …
has the profound potential to change genetic improvement programs and production …
Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications
In livestock, many studies have reported the results of imputation to 50k single nucleotide
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
polymorphism (SNP) genotypes for animals that are genotyped with low-density SNP …
Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein–Friesian dairy cattle
Background Inbreeding decreases animal performance (inbreeding depression), but not all
inbreeding is expected to be equally harmful. Recent inbreeding is expected to be more …
inbreeding is expected to be equally harmful. Recent inbreeding is expected to be more …
Genetic and genomic monitoring with minimally invasive sampling methods
The decreasing cost and increasing scope and power of emerging genomic technologies
are reshaping the field of molecular ecology. However, many modern genomic approaches …
are reshaping the field of molecular ecology. However, many modern genomic approaches …
Genomic evaluations with many more genotypes
PM VanRaden, JR O'Connell, GR Wiggans… - Genetics Selection …, 2011 - Springer
Abstract Background Genomic evaluations in Holstein dairy cattle have quickly become
more reliable over the last two years in many countries as more animals have been …
more reliable over the last two years in many countries as more animals have been …
Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions
Genomic prediction from whole-genome sequence data is attractive, as the accuracy of
genomic prediction is no longer bounded by extent of linkage disequilibrium between DNA …
genomic prediction is no longer bounded by extent of linkage disequilibrium between DNA …
Design of a bovine low-density SNP array optimized for imputation
D Boichard, H Chung, R Dassonneville, X David… - PloS one, 2012 - journals.plos.org
The Illumina BovineLD BeadChip was designed to support imputation to higher density
genotypes in dairy and beef breeds by including single-nucleotide polymorphisms (SNPs) …
genotypes in dairy and beef breeds by including single-nucleotide polymorphisms (SNPs) …
Imputation of unordered markers and the impact on genomic selection accuracy
Genomic selection, a breeding method that promises to accelerate rates of genetic gain,
requires dense, genome-wide marker data. Genotyping-by-sequencing can generate a …
requires dense, genome-wide marker data. Genotyping-by-sequencing can generate a …
Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle
R van Binsbergen, MCAM Bink, MPL Calus… - Genetics Selection …, 2014 - Springer
Background The use of whole-genome sequence data can lead to higher accuracy in
genome-wide association studies and genomic predictions. However, to benefit from whole …
genome-wide association studies and genomic predictions. However, to benefit from whole …
Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species
Genomic selection can accelerate genetic progress in aquaculture breeding programmes,
particularly for traits measured on siblings of selection candidates. However, it is not widely …
particularly for traits measured on siblings of selection candidates. However, it is not widely …