Image processing and recognition for biological images

S Uchida - Development, growth & differentiation, 2013 - Wiley Online Library
This paper reviews image processing and pattern recognition techniques, which will be
useful to analyze bioimages. Although this paper does not provide their technical details, it …

Analysis of live cell images: Methods, tools and opportunities

TA Nketia, H Sailem, G Rohde, R Machiraju, J Rittscher - Methods, 2017 - Elsevier
Advances in optical microscopy, biosensors and cell culturing technologies have
transformed live cell imaging. Thanks to these advances live cell imaging plays an …

A benchmark for comparison of cell tracking algorithms

M Maška, V Ulman, D Svoboda, P Matula… - …, 2014 - academic.oup.com
Motivation: Automatic tracking of cells in multidimensional time-lapse fluorescence
microscopy is an important task in many biomedical applications. A novel framework for …

An objective comparison of cell-tracking algorithms

V Ulman, M Maška, KEG Magnusson, O Ronneberger… - Nature …, 2017 - nature.com
We present a combined report on the results of three editions of the Cell Tracking
Challenge, an ongoing initiative aimed at promoting the development and objective …

[HTML][HTML] Patterns of early p21 dynamics determine proliferation-senescence cell fate after chemotherapy

CH Hsu, SJ Altschuler, LF Wu - Cell, 2019 - cell.com
Chemotherapy is designed to induce cell death. However, at non-lethal doses, cancer cells
can choose to remain proliferative or become senescent. The slow development of …

Global linking of cell tracks using the Viterbi algorithm

KEG Magnusson, J Jaldén, PM Gilbert… - IEEE transactions on …, 2014 - ieeexplore.ieee.org
Automated tracking of living cells in microscopy image sequences is an important and
challenging problem. With this application in mind, we propose a global track linking …

Automated deep lineage tree analysis using a Bayesian single cell tracking approach

K Ulicna, G Vallardi, G Charras… - Frontiers in Computer …, 2021 - frontiersin.org
Single-cell methods are beginning to reveal the intrinsic heterogeneity in cell populations,
arising from the interplay of deterministic and stochastic processes. However, it remains …

Graph neural network for cell tracking in microscopy videos

T Ben-Haim, TR Raviv - European Conference on Computer Vision, 2022 - Springer
We present a novel graph neural network (GNN) approach for cell tracking in high-
throughput microscopy videos. By modeling the entire time-lapse sequence as a direct …

Cell tracking using deep neural networks with multi-task learning

T He, H Mao, J Guo, Z Yi - Image and Vision Computing, 2017 - Elsevier
Cell tracking plays crucial role in biomedical and computer vision areas. As cells generally
have frequent deformation activities and small sizes in microscope image, tracking the non …

Graphical model for joint segmentation and tracking of multiple dividing cells

M Schiegg, P Hanslovsky, C Haubold, U Koethe… - …, 2015 - academic.oup.com
Motivation: To gain fundamental insight into the development of embryos, biologists seek to
understand the fate of each and every embryonic cell. For the generation of cell tracks in …