The evolutionary origin of orphan genes

D Tautz, T Domazet-Lošo - Nature Reviews Genetics, 2011 - nature.com
Gene evolution has long been thought to be primarily driven by duplication and
rearrangement mechanisms. However, every evolutionary lineage harbours orphan genes …

Long noncoding RNAs and repetitive elements: junk or intimate evolutionary partners?

H Lee, Z Zhang, HM Krause - TRENDS in Genetics, 2019 - cell.com
Our recent ability to sequence entire genomes, along with all of their transcribed RNAs, has
led to the surprising finding that only∼ 1% of the human genome is used to encode proteins …

De novo gene birth

SB Van Oss, AR Carvunis - PLoS genetics, 2019 - journals.plos.org
De novo gene birth is the process by which new genes evolve from DNA sequences that
were ancestrally non-genic. De novo genes represent a subset of novel genes, and may be …

A de novo evolved gene contributes to rice grain shape difference between indica and japonica

R Chen, N Xiao, Y Lu, T Tao, Q Huang, S Wang… - Nature …, 2023 - nature.com
The role of de novo evolved genes from non-coding sequences in regulating morphological
differentiation between species/subspecies remains largely unknown. Here, we show that a …

Long non-coding RNAs as a source of new peptides

J Ruiz-Orera, X Messeguer, JA Subirana, MM Alba - elife, 2014 - elifesciences.org
Deep transcriptome sequencing has revealed the existence of many transcripts that lack
long or conserved open reading frames (ORFs) and which have been termed long non …

New genes as drivers of phenotypic evolution

S Chen, BH Krinsky, M Long - Nature Reviews Genetics, 2013 - nature.com
During the course of evolution, genomes acquire novel genetic elements as sources of
functional and phenotypic diversity, including new genes that originated in recent evolution …

Open questions in the study of de novo genes: what, how and why

A McLysaght, LD Hurst - Nature Reviews Genetics, 2016 - nature.com
The study of de novo protein-coding genes is maturing from the ad hoc reporting of
individual cases to the systematic analysis of extensive genomic data from several species …

Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila

E Witt, S Benjamin, N Svetec, L Zhao - Elife, 2019 - elifesciences.org
The testis is a peculiar tissue in many respects. It shows patterns of rapid gene evolution and
provides a hotspot for the origination of genetic novelties such as de novo genes …

Decoding the spermatogenesis program: new insights from transcriptomic analyses

M Rabbani, X Zheng, GL Manske… - Annual review of …, 2022 - annualreviews.org
Spermatogenesis is a complex differentiation process coordinated spatiotemporally across
and along seminiferous tubules. Cellular heterogeneity has made it challenging to obtain …

New gene evolution: little did we know

M Long, NW VanKuren, S Chen… - Annual review of …, 2013 - annualreviews.org
Genes are perpetually added to and deleted from genomes during evolution. Thus, it is
important to understand how new genes are formed and how they evolve to be critical …