The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
The interrogation of genetic markers in environmental meta-barcoding studies is currently
seriously hindered by the lack of taxonomically curated reference data sets for the targeted …
seriously hindered by the lack of taxonomically curated reference data sets for the targeted …
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
H Zhang, S Gao, MJ Lercher, S Hu… - Nucleic acids …, 2012 - academic.oup.com
EvolView is a web application for visualizing, annotating and managing phylogenetic trees.
First, EvolView is a phylogenetic tree viewer and customization tool; it visualizes trees in …
First, EvolView is a phylogenetic tree viewer and customization tool; it visualizes trees in …
The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems
Type 3 secretion systems (T3SSs) are essential components of two complex bacterial
machineries: the flagellum, which drives cell motility, and the non-flagellar T3SS (NF-T3SS) …
machineries: the flagellum, which drives cell motility, and the non-flagellar T3SS (NF-T3SS) …
Strong seasonality of marine microbial eukaryotes in a high-Arctic fjord (Isfjorden, in West Spitsbergen, Norway)
M Marquardt, A Vader, EI Stübner… - Applied and …, 2016 - Am Soc Microbiol
The Adventfjorden time series station (IsA) in Isfjorden, West Spitsbergen, Norway, was
sampled frequently from December 2011 to December 2012. The community composition of …
sampled frequently from December 2011 to December 2012. The community composition of …
Metavir: a web server dedicated to virome analysis
Metavir is a web server dedicated to the analysis of viral metagenomes (viromes). In addition
to classical approaches for analyzing metagenomes (general sequence characteristics …
to classical approaches for analyzing metagenomes (general sequence characteristics …
[HTML][HTML] Candidatus Nitrosocaldus cavascurensis, an ammonia oxidizing, extremely thermophilic archaeon with a highly mobile genome
Ammonia oxidizing archaea (AOA) of the phylum Thaumarchaeota are widespread in
moderate environments but their occurrence and activity has also been demonstrated in hot …
moderate environments but their occurrence and activity has also been demonstrated in hot …
Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to …
A wide diversity of organisms utilize faecal habitats as a rich nutrient source or a mechanism
to traverse through animal hosts. We sequenced the 18S rRNA genes of the coprophilic …
to traverse through animal hosts. We sequenced the 18S rRNA genes of the coprophilic …
Armadillo 1.1: an original workflow platform for designing and conducting phylogenetic analysis and simulations
In this paper we introduce Armadillo v1. 1, a novel workflow platform dedicated to designing
and conducting phylogenetic studies, including comprehensive simulations. A number of …
and conducting phylogenetic studies, including comprehensive simulations. A number of …
Agaricus section Arvenses: three new species in highland subtropical Southwest China
Agaricus is a genus of saprobic basidiomycetes with more than 400 species recognized
worldwide, with about 50 species known in China. Our objective was to investigate three …
worldwide, with about 50 species known in China. Our objective was to investigate three …
GB‐to‐TNT: facilitating creation of matrices from GenBank and diagnosis of results in TNT
PA Goloboff, SA Catalano - Cladistics, 2012 - Wiley Online Library
This paper presents a pipeline, implemented in an open‐source program called GB→ TNT
(GenBank‐to‐TNT), for creating large molecular matrices, starting from GenBank files and …
(GenBank‐to‐TNT), for creating large molecular matrices, starting from GenBank files and …