Ubiquitin-like proteins

AG van der Veen, HL Ploegh - Annual review of biochemistry, 2012 - annualreviews.org
The eukaryotic ubiquitin family encompasses nearly 20 proteins that are involved in the
posttranslational modification of various macromolecules. The ubiquitin-like proteins (UBLs) …

How is precursor messenger RNA spliced by the spliceosome?

R Wan, R Bai, X Zhan, Y Shi - Annual review of biochemistry, 2020 - annualreviews.org
Splicing of the precursor messenger RNA, involving intron removal and exon ligation, is
mediated by the spliceosome. Together with biochemical and genetic investigations of the …

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

S Foret, R Kucharski, M Pellegrini… - Proceedings of the …, 2012 - National Acad Sciences
In honey bees (Apis mellifera), the development of a larva into either a queen or worker
depends on differential feeding with royal jelly and involves epigenomic modifications by …

Activation of the mitochondrial unfolded protein response does not predict longevity in Caenorhabditis elegans

CF Bennett, H Vander Wende, M Simko, S Klum… - Nature …, 2014 - nature.com
Recent studies have propagated the model that the mitochondrial unfolded protein response
(UPRmt) is causal for lifespan extension from inhibition of the electron transport chain (ETC) …

Structures of the human pre-catalytic spliceosome and its precursor spliceosome

X Zhan, C Yan, X Zhang, J Lei, Y Shi - Cell research, 2018 - nature.com
The pre-catalytic spliceosome (B complex) is preceded by its precursor spliceosome (pre-B
complex) and followed by the activated spliceosome (Bact complex). The pre-B-to-B and B …

The expanding universe of ubiquitin and ubiquitin-like modifiers

RD Vierstra - Plant physiology, 2012 - academic.oup.com
As we near a complete understanding of plant transcriptomes and their corresponding
proteomes, a remaining frontier in plant biology will be the in-depth definition of the …

Transcription rate strongly affects splicing fidelity and cotranscriptionality in budding yeast

V Aslanzadeh, Y Huang, G Sanguinetti… - Genome …, 2018 - genome.cshlp.org
The functional consequences of alternative splicing on altering the transcription rate have
been the subject of intensive study in mammalian cells but less is known about effects of …

Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins

Z Zhang, V Kumar, O Dybkov, CL Will, H Urlaub… - The EMBO …, 2024 - embopress.org
The B complex is a key intermediate stage of spliceosome assembly. To improve the
structural resolution of monomeric, human spliceosomal B (hB) complexes and thereby …

Post-translational modification and protein sorting to small extracellular vesicles including exosomes by ubiquitin and UBLs

H Ageta, K Tsuchida - Cellular and Molecular Life Sciences, 2019 - Springer
Exosomes, a type of small extracellular vesicles (sEVs), are secreted membrane vesicles
that are derived from various cell types, including cancer cells, mesenchymal stem cells, and …

Widespread Use of Non-productive Alternative Splice Sites in Saccharomyces cerevisiae

T Kawashima, S Douglass, J Gabunilas… - PLoS …, 2014 - journals.plos.org
Saccharomyces cerevisiae has been used as a model system to investigate the
mechanisms of pre-mRNA splicing but only a few examples of alternative splice site usage …