Coagulation and inflammation in cancer: Limitations and prospects for treatment

AK Singh, R Malviya - Biochimica et Biophysica Acta (BBA)-Reviews on …, 2022 - Elsevier
The development of so-called immune checkpoint inhibitors (ICIs), which target specific
molecular processes of tumour growth, has had a transformative effect on cancer treatment …

Tuneable resolution as a systems biology approach for multi‐scale, multi‐compartment computational models

DE Kirschner, CA Hunt, S Marino… - … Systems Biology and …, 2014 - Wiley Online Library
The use of multi‐scale mathematical and computational models to study complex biological
processes is becoming increasingly productive. Multi‐scale models span a range of spatial …

In silico, in vitro, and in vivo studies indicate the potential use of bolaamphiphiles for therapeutic siRNAs delivery

T Kim, KA Afonin, M Viard, AY Koyfman… - … Therapy-Nucleic Acids, 2013 - cell.com
Specific small interfering RNAs (siRNAs) designed to silence different oncogenic pathways
can be used for cancer therapy. However, non-modified naked siRNAs have short half-lives …

A computational, tissue-realistic model of pressure ulcer formation in individuals with spinal cord injury

C Ziraldo, A Solovyev, A Allegretti… - PLoS computational …, 2015 - journals.plos.org
People with spinal cord injury (SCI) are predisposed to pressure ulcers (PU). PU remain a
significant burden in cost of care and quality of life despite improved mechanistic …

Contrasting model mechanisms of alanine aminotransferase (ALT) release from damaged and necrotic hepatocytes as an example of general biomarker mechanisms

AK Smith, GEP Ropella, MR McGill… - PLoS computational …, 2020 - journals.plos.org
Interpretations of elevated blood levels of alanine aminotransferase (ALT) for drug-induced
liver injury often assume that the biomarker is released passively from dying cells. However …

Agent‐based modeling: a systematic assessment of use cases and requirements for enhancing pharmaceutical research and development productivity

CA Hunt, RC Kennedy, SHJ Kim… - … : Systems Biology and …, 2013 - Wiley Online Library
A crisis continues to brew within the pharmaceutical research and development (R&D)
enterprise: productivity continues declining as costs rise, despite ongoing, often dramatic …

Competing mechanistic hypotheses of acetaminophen-induced hepatotoxicity challenged by virtual experiments

AK Smith, BK Petersen, GEP Ropella… - PloS computational …, 2016 - journals.plos.org
Acetaminophen-induced liver injury in mice is a model for drug-induced liver injury in
humans. A precondition for improved strategies to disrupt and/or reverse the damage is a …

Toward modular biological models: defining analog modules based on referent physiological mechanisms

BK Petersen, GEP Ropella, CA Hunt - BMC systems biology, 2014 - Springer
Background Currently, most biomedical models exist in isolation. It is often difficult to reuse
or integrate models or their components, in part because they are not modular. Modular …

Augmenting Surgery via Multi-scale Modeling and Translational Systems Biology in the Era of Precision Medicine: A Multidisciplinary Perspective

GS Kassab, G An, EA Sander, MI Miga… - Annals of biomedical …, 2016 - Springer
In this era of tremendous technological capabilities and increased focus on improving
clinical outcomes, decreasing costs, and increasing precision, there is a need for a more …

Propagation of pericentral necrosis during acetaminophen-induced liver injury: evidence for early interhepatocyte communication and information exchange

RC Kennedy, AK Smith, GEP Ropella… - Toxicological …, 2019 - academic.oup.com
Acetaminophen (APAP)-induced liver injury is clinically significant, and APAP overdose in
mice often serves as a model for drug-induced liver injury in humans. By specifying that …