NCBI Taxonomy: a comprehensive update on curation, resources and tools

CL Schoch, S Ciufo, M Domrachev, CL Hotton… - Database, 2020 - academic.oup.com
Abstract The National Center for Biotechnology Information (NCBI) Taxonomy includes
organism names and classifications for every sequence in the nucleotide and protein …

Soil protists: a fertile frontier in soil biology research

S Geisen, EAD Mitchell, S Adl… - FEMS microbiology …, 2018 - academic.oup.com
Protists include all eukaryotes except plants, fungi and animals. They are an essential, yet
often forgotten, component of the soil microbiome. Method developments have now …

Revisions to the classification, nomenclature, and diversity of eukaryotes

SM Adl, D Bass, CE Lane, J Lukeš… - Journal of Eukaryotic …, 2019 - Wiley Online Library
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk.
Microbiol. 59 (5)] and retains an emphasis on protists. Changes since have improved the …

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems

D Singer, CVW Seppey, G Lentendu, M Dunthorn… - Environment …, 2021 - Elsevier
Protists dominate eukaryotic diversity and play key functional roles in all ecosystems,
particularly by catalyzing carbon and nutrient cycling. To date, however, a comparative …

Protists: puppet masters of the rhizosphere microbiome

Z Gao, I Karlsson, S Geisen, G Kowalchuk… - Trends in Plant …, 2019 - cell.com
The rhizosphere microbiome is a central determinant of plant performance. Microbiome
assembly has traditionally been investigated from a bottom-up perspective, assessing how …

Soil protist communities form a dynamic hub in the soil microbiome

W Xiong, A Jousset, S Guo, I Karlsson, Q Zhao… - The ISME …, 2018 - academic.oup.com
Soil microbes are essential for soil fertility. However, most studies focus on bacterial and/or
fungal communities, while the top-down drivers of this microbiome composition, protists …

[HTML][HTML] EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotes

DJ Richter, C Berney, JFH Strassert… - Peer Community …, 2022 - peercommunityjournal.org
EukProt is a database of published and publicly available predicted protein sets selected to
represent the breadth of eukaryotic diversity, currently including 993 species from all major …

The European nucleotide archive in 2019

C Amid, BTF Alako… - Nucleic acids …, 2020 - academic.oup.com
Abstract The European Nucleotide Archive (ENA, https://www. ebi. ac. uk/ena) at the
European Molecular Biology Laboratory's European Bioinformatics Institute provides open …

Metagenomics approaches for the detection and surveillance of emerging and recurrent plant pathogens

E Piombo, A Abdelfattah, S Droby, M Wisniewski… - Microorganisms, 2021 - mdpi.com
Globalization has a dramatic effect on the trade and movement of seeds, fruits and
vegetables, with a corresponding increase in economic losses caused by the introduction of …

Perspectives from ten years of protist studies by high‐throughput metabarcoding

L Santoferrara, F Burki, S Filker… - Journal of Eukaryotic …, 2020 - Wiley Online Library
During the last decade, high‐throughput metabarcoding became routine for analyzing
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …