The role of retrotransposable elements in ageing and age-associated diseases

V Gorbunova, A Seluanov, P Mita, W McKerrow… - Nature, 2021 - nature.com
The genomes of virtually all organisms contain repetitive sequences that are generated by
the activity of transposable elements (transposons). Transposons are mobile genetic …

Cytoplasmic DNA: sources, sensing, and role in aging and disease

KN Miller, SG Victorelli, H Salmonowicz, N Dasgupta… - Cell, 2021 - cell.com
Endogenous cytoplasmic DNA (cytoDNA) species are emerging as key mediators of
inflammation in diverse physiological and pathological contexts. Although the role of …

Regulatory activities of transposable elements: from conflicts to benefits

EB Chuong, NC Elde, C Feschotte - Nature Reviews Genetics, 2017 - nature.com
Transposable elements (TEs) are a prolific source of tightly regulated, biochemically active
non-coding elements, such as transcription factor-binding sites and non-coding RNAs. Many …

[HTML][HTML] Resurrection of endogenous retroviruses during aging reinforces senescence

X Liu, Z Liu, Z Wu, J Ren, Y Fan, L Sun, G Cao, Y Niu… - Cell, 2023 - cell.com
Whether and how certain transposable elements with viral origins, such as endogenous
retroviruses (ERVs) dormant in our genomes, can become awakened and contribute to the …

Epigenetics and aging

S Pal, JK Tyler - Science advances, 2016 - science.org
Over the past decade, a growing number of studies have revealed that progressive changes
to epigenetic information accompany aging in both dividing and nondividing cells …

Epigenetic regulation of ageing: linking environmental inputs to genomic stability

BA Benayoun, EA Pollina, A Brunet - Nature reviews Molecular cell …, 2015 - nature.com
Ageing is affected by both genetic and non-genetic factors. Here, we review the chromatin-
based epigenetic changes that occur during ageing, the role of chromatin modifiers in …

Restricting retrotransposons: a review

JL Goodier - Mobile DNA, 2016 - Springer
Retrotransposons have generated about 40% of the human genome. This review examines
the strategies the cell has evolved to coexist with these genomic “parasites”, focussing on …

The aging epigenome

LN Booth, A Brunet - Molecular cell, 2016 - cell.com
During aging, the mechanisms that normally maintain health and stress resistance strikingly
decline, resulting in decrepitude, frailty, and ultimately death. Exactly when and how this …

Stem cell aging: mechanisms, regulators and therapeutic opportunities

J Oh, YD Lee, AJ Wagers - Nature medicine, 2014 - nature.com
Aging tissues experience a progressive decline in homeostatic and regenerative capacities,
which has been attributed to degenerative changes in tissue-specific stem cells, stem cell …

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets

Y Jin, OH Tam, E Paniagua, M Hammell - Bioinformatics, 2015 - academic.oup.com
Motivation: Most RNA-seq data analysis software packages are not designed to handle the
complexities involved in properly apportioning short sequencing reads to highly repetitive …