Postbiotic emissaries: a comprehensive review on the bioprospecting and production of bioactive compounds by Enterococcus species

A Chaudhary, N Prajapati, A Prajapati… - … Journal of Food …, 2024 - Wiley Online Library
Enterococcus species have been acknowledged for their diverse metabolic capabilities,
resulting in a wide array of bioactive compounds that show promise for therapeutic use. This …

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

S Nouws, B Bogaerts, B Verhaegen, S Denayer… - Scientific reports, 2020 - nature.com
Whole genome sequencing (WGS) has proven to be the ultimate tool for bacterial isolate
characterization and relatedness determination. However, standardized and harmonized …

Effect of alkaline leaching of phosphogypsum on sulfate reduction activity and bacterial community composition using different sources of anaerobic microbial …

A Bounaga, A Alsanea, M Danouche… - Science of the Total …, 2023 - Elsevier
Abstract Phosphogypsum (PG), a by-product of the phosphate industry, is high in sulfate,(SO
4 2−), which makes it an excellent substrate for sulfate-reducing bacteria (SRB) to produce …

Responses of bacterial communities and organic matter degradation in surface sediment to Macrobrachium nipponense bioturbation

Y Hou, B Li, G Feng, C Zhang, J He, H Li… - Science of The Total …, 2021 - Elsevier
The excessive accumulation of organic matter (OM) in sediments in aquaculture ponds is a
potential environmental threat due to the risk of endogenous water pollution and …

The benefits of whole genome sequencing for foodborne outbreak investigation from the perspective of a national reference laboratory in a smaller country

S Nouws, B Bogaerts, B Verhaegen, S Denayer… - Foods, 2020 - mdpi.com
Gradually, conventional methods for foodborne pathogen typing are replaced by whole
genome sequencing (WGS). Despite studies describing the overall benefits, National …

In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes

F Palma, I Mangone, A Janowicz, A Moura… - BMC genomics, 2022 - Springer
Background Whole genome sequencing analyzed by core genome multi-locus sequence
typing (cgMLST) is widely used in surveillance of the pathogenic bacteria Listeria …

Whole genome sequencing provides an added value to the investigation of staphylococcal food poisoning outbreaks

S Nouws, B Bogaerts, B Verhaegen… - Frontiers in …, 2021 - frontiersin.org
Through staphylococcal enterotoxin (SE) production, Staphylococcus aureus is a common
cause of food poisoning. Detection of staphylococcal food poisoning (SFP) is mostly …

Transcriptomic and genetic profiling in a spontaneous non-human primate model of hypertrophic cardiomyopathy and sudden cardiac death

VN Rivas, MW Vandewege, Y Ueda, JL Kaplan… - Scientific Reports, 2024 - nature.com
Hypertrophic cardiomyopathy (HCM) afflicts humans, cats, pigs, and rhesus macaques.
Disease sequelae include congestive heart failure, thromboembolism, and sudden cardiac …

Impact of wet-lab protocols on quality of whole-genome short-read sequences from foodborne microbial pathogens

LF Forth, E Brinks, G Denay, A Fawzy… - Frontiers in …, 2023 - frontiersin.org
For successful elucidation of a food-borne infection chain, the availability of high-quality
sequencing data from suspected microbial contaminants is a prerequisite. Commonly, those …

Evaluating coverage bias in next-generation sequencing of Escherichia coli

S Gunasekera, S Abraham, M Stegger, S Pang… - Plos one, 2021 - journals.plos.org
Whole-genome sequencing is essential to many facets of infectious disease research.
However, technical limitations such as bias in coverage and tagmentation, and difficulties …