According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

Shotgun proteomics aims to identify and quantify the thousands of proteins in complex
mixtures such as cell and tissue lysates and biological fluids. This approach uses liquid …

The search engine processor (SEP ro) is a tool for filtering, organizing, sharing, and
displaying peptide spectrum matches. It employs a novel three‐tier B ayesian approach that …

Astrocytic tumors are known for their high progression capacity and high mortality rates; in
this regard, proteins correlated to prognosis can aid medical conduct. Although several …

PatternLab for proteomics is a self‐contained computational environment for analyzing
shotgun proteomic data. Recent improvements incorporate modules to facilitate the …

While peptides carrying PTM s are routinely identified in gel‐free MS, the localization of the
PTM s onto the peptide sequences remains challenging. Search engine scores of secondary …

Erythrina velutina is a Brazilian native tree of the Caatinga (a unique semiarid biome). It is
widely used in traditional medicine showing anti-inflammatory and central nervous system …

In a time frame of a few decades, protein identification went from laborious single protein
identification to automated identification of entire proteomes. This shift was enabled by the …

Peptide spectrum matching is the current gold standard for protein identification via mass-
spectrometry-based proteomics. Peptide spectrum matching compares experimental mass …

Small molecules are components of fungal extracellular vesicles (EVs), but their biological
roles are only superficially known. NOP16 is a eukaryotic gene that is required for the activity …