Molecular and hormonal mechanisms regulating fleshy fruit ripening

S Li, K Chen, D Grierson - Cells, 2021 - mdpi.com
This article focuses on the molecular and hormonal mechanisms underlying the control of
fleshy fruit ripening and quality. Recent research on tomato shows that ethylene, acting …

Long non-coding RNAs and complex diseases: from experimental results to computational models

X Chen, CC Yan, X Zhang, ZH You - Briefings in bioinformatics, 2017 - academic.oup.com
LncRNAs have attracted lots of attentions from researchers worldwide in recent decades.
With the rapid advances in both experimental technology and computational prediction …

LNCipedia 5: towards a reference set of human long non-coding RNAs

PJ Volders, J Anckaert, K Verheggen… - Nucleic acids …, 2019 - academic.oup.com
While long non-coding RNA (lncRNA) research in the past has primarily focused on the
discovery of novel genes, today it has shifted towards functional annotation of this large …

Long non-coding RNAs and their functions in plants

JA Chekanova - Current opinion in plant biology, 2015 - Elsevier
Highlights•Plant lncRNAs participate in regulation of transcription, splicing, and nuclear
structure.•In flowering, multiple lncRNAs act in silencing of FLC via diverse …

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase …

A Wibowo, C Becker, G Marconi, J Durr, J Price… - elife, 2016 - elifesciences.org
Inducible epigenetic changes in eukaryotes are believed to enable rapid adaptation to
environmental fluctuations. We have found distinct regions of the Arabidopsis genome that …

High-resolution expression map of the Arabidopsis root reveals alternative splicing and lincRNA regulation

S Li, M Yamada, X Han, U Ohler, PN Benfey - Developmental cell, 2016 - cell.com
The extent to which alternative splicing and long intergenic noncoding RNAs (lincRNAs)
contribute to the specialized functions of cells within an organ is poorly understood. We …

Non-coding RNAs and their roles in stress response in plants

J Wang, X Meng, OB Dobrovolskaya… - Genomics …, 2017 - academic.oup.com
Eukaryotic genomes encode thousands of non-coding RNAs (ncRNAs), which play crucial
roles in transcriptional and post-transcriptional regulation of gene expression. Accumulating …

Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation

UC Jha, H Nayyar, R Jha, M Khurshid, M Zhou… - BMC Plant …, 2020 - Springer
Background The immobile nature of plants means that they can be frequently confronted by
various biotic and abiotic stresses during their lifecycle. Among the various abiotic stresses …

PLncDB V2. 0: a comprehensive encyclopedia of plant long noncoding RNAs

J Jin, P Lu, Y Xu, Z Li, S Yu, J Liu, H Wang… - Nucleic Acids …, 2021 - academic.oup.com
Long noncoding RNAs (lncRNAs) are transcripts longer than 200 nucleotides with little or no
protein coding potential. The expanding list of lncRNAs and accumulating evidence of their …

Analysis of transcriptome and epitranscriptome in plants using PacBio Iso-Seq and nanopore-based direct RNA sequencing

L Zhao, H Zhang, MV Kohnen, KVSK Prasad… - Frontiers in …, 2019 - frontiersin.org
Nanopore sequencing from Oxford Nanopore Technologies (ONT) and Pacific BioSciences
(PacBio) single-molecule real-time (SMRT) long-read isoform sequencing (Iso-Seq) are …