Updated virophage taxonomy and distinction from polinton-like viruses

S Roux, MG Fischer, T Hackl, LA Katz, F Schulz… - Biomolecules, 2023 - mdpi.com
Virophages are small dsDNA viruses that hijack the machinery of giant viruses during the co-
infection of a protist (ie, microeukaryotic) host and represent an exceptional case of …

Fabricating an advanced electrogenic chassis by activating microbial metabolism and fine-tuning extracellular electron transfer

YY Fan, Q Tang, Y Li, H Sun, M Xu, HQ Yu - Trends in Biotechnology, 2024 - cell.com
Exploiting electrogenic microorganisms as unconventional chassis hosts offers potential
solutions to global energy and environmental challenges. However, their limited …

Trait biases in microbial reference genomes

S Albright, S Louca - Scientific Data, 2023 - nature.com
Common culturing techniques and priorities bias our discovery towards specific traits that
may not be representative of microbial diversity in nature. So far, these biases have not been …

Blue-light irradiation induced partial nitrification

R Zheng, Y Feng, L Kong, X Wu, J Zhou, L Zhang, S Liu - Water Research, 2024 - Elsevier
The role of ray radiation from the sunlight acting on organisms has long-term been
investigated. However, how the light with different wavelengths affects nitrification and the …

Comammox biogeography subject to anthropogenic interferences along a high-altitude river

S Liu, H Cai, X Zhao, Z Wu, Q Chen, X Xu, S Zhong… - Water Research, 2022 - Elsevier
The recent discovery of comammox Nitrospira performing complete ammonia oxidation to
nitrate has overturned the long-held dogma of two-step nitrification on Earth, yet little is …

Depth related variation of isoprenoid and hydroxylated tetraether lipids in Lake Lugu, Southwest China: Implications for palaeoenvironmental reconstructions

J Li, BDA Naafs, R Wang, X Lai, H Long, H Yang… - Chemical …, 2023 - Elsevier
Archaeal glycerol dibiphytanyl glycerol tetraethers (isoGDGTs) and their hydroxylated
derivatives (OH-GDGTs) have been increasingly applied to reconstruct past changes in lake …

Some like it cold: the cellular organization and physiological limits of cold‐tolerant nitrite‐oxidizing Nitrotoga

S Keuter, H Koch, K Sass, S Wegen… - Environmental …, 2022 - Wiley Online Library
Chemolithoautotrophic production of nitrate is accomplished by the polyphyletic functional
group of nitrite‐oxidizing bacteria (NOB). A widely distributed and important NOB clade in …

Gallionellaceae pangenomic analysis reveals insight into phylogeny, metabolic flexibility, and iron oxidation mechanisms

RL Hoover, JL Keffer, SW Polson, CS Chan - Msystems, 2023 - Am Soc Microbiol
The iron-oxidizing Gallionellaceae drive a wide variety of biogeochemical cycles through
their metabolisms and biominerals. To better understand the environmental impacts of …

Out of sight, but not out of season: Nitrifier distributions and population dynamics in a large oligotrophic lake

LM Peoples, MH Seixas, KA Evans… - Environmental …, 2024 - Wiley Online Library
Nitrification is an important control on the form and distribution of nitrogen in freshwater
ecosystems. However, the seasonality of nitrogen pools and the diversity of organisms …

Diversity, distribution, and expression of opsin genes in freshwater lakes

S He, AM Linz, SLR Stevens, PQ Tran… - Molecular …, 2023 - Wiley Online Library
Microbial rhodopsins are widely distributed in aquatic environments and may significantly
contribute to phototrophy and energy budgets in global oceans. However, the study of …