A critical review on exploiting the pharmaceutical potential of plant endophytic fungi

S Gupta, P Chaturvedi, MG Kulkarni… - Biotechnology advances, 2020 - Elsevier
The escalating demand for secondary metabolites in international markets poses a severe
threat to many plant species. An unscrupulous collection is also the immediate challenge to …

Chemical ecology of endophytic fungi: origins of secondary metabolites

S Kusari, C Hertweck, M Spiteller - Chemistry & biology, 2012 - cell.com
Endophytes constitute a remarkably multifarious group of microorganisms ubiquitous in
plants and maintain an imperceptible association with their hosts for at least a part of their …

Comparing protein abundance and mRNA expression levels on a genomic scale

D Greenbaum, C Colangelo, K Williams, M Gerstein - Genome biology, 2003 - Springer
Attempts to correlate protein abundance with mRNA expression levels have had variable
success. We review the results of these comparisons, focusing on yeast. In the process, we …

Feature-based prediction of non-classical and leaderless protein secretion

JD Bendtsen, LJ Jensen, N Blom… - Protein Engineering …, 2004 - academic.oup.com
We present a sequence-based method, SecretomeP, for the prediction of mammalian
secretory proteins targeted to the non-classical secretory pathway, ie proteins without an N …

Understanding the diversity of foliar endophytic fungi: progress, challenges, and frontiers

AE Arnold - Fungal biology reviews, 2007 - Elsevier
Fungal endophytes, a diverse group of primarily ascomycetous fungi defined functionally by
their occurrence within asymptomatic photosynthetic tissues of plants, occur in all major …

Coexpression analysis of human genes across many microarray data sets

HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis - Genome research, 2004 - genome.cshlp.org
We present a large-scale analysis of mRNA coexpression based on 60 large human data
sets containing a total of 3924 microarrays. We sought pairs of genes that were reliably …

The extracellular biology of the lactobacilli

M Kleerebezem, P Hols, E Bernard… - FEMS microbiology …, 2010 - academic.oup.com
Lactobacilli belong to the lactic acid bacteria, which play a key role in industrial and artisan
food raw-material fermentation, including a large variety of fermented dairy products. Next to …

A genome-wide association study identifies protein quantitative trait loci (pQTLs)

D Melzer, JRB Perry, D Hernandez, AM Corsi… - PLoS …, 2008 - journals.plos.org
There is considerable evidence that human genetic variation influences gene expression.
Genome-wide studies have revealed that mRNA levels are associated with genetic variation …

Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue

M Desvaux, M Hébraud, R Talon, IR Henderson - Trends in microbiology, 2009 - cell.com
Extracellular proteins are a subject of intense interest because of their essential roles in
bacterial lifestyles. However, several terms related to secretion are used confusingly in the …

Biomarker discovery from pancreatic cancer secretome using a differential proteomic approach* S

M Grønborg, TZ Kristiansen, A Iwahori, R Chang… - Molecular & Cellular …, 2006 - ASBMB
Quantitative proteomics can be used as a screening tool for identification of differentially
expressed proteins as potential biomarkers for cancers. Candidate biomarkers from such …