Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies

CL Tamba, YL Ni, YM Zhang - PLoS computational biology, 2017 - journals.plos.org
Genome-wide association study (GWAS) entails examining a large number of single
nucleotide polymorphisms (SNPs) in a limited sample with hundreds of individuals, implying …

pKWmEB: integration of Kruskal–Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study

WL Ren, YJ Wen, JM Dunwell, YM Zhang - Heredity, 2018 - nature.com
Although nonparametric methods in genome-wide association studies (GWAS) are robust in
quantitative trait nucleotide (QTN) detection, the absence of polygenic background control in …

Robust genetic interaction analysis

M Wu, S Ma - Briefings in bioinformatics, 2019 - academic.oup.com
For the risk, progression, and response to treatment of many complex diseases, it has been
increasingly recognized that genetic interactions (including gene–gene and gene …

Multiobjective multifactor dimensionality reduction to detect SNP–SNP interactions

CH Yang, LY Chuang, YD Lin - Bioinformatics, 2018 - academic.oup.com
Motivation Single-nucleotide polymorphism (SNP)–SNP interactions (SSIs) are popular
markers for understanding disease susceptibility. Multifactor dimensionality reduction (MDR) …

A unified model based multifactor dimensionality reduction framework for detecting gene–gene interactions

W Yu, S Lee, T Park - Bioinformatics, 2016 - academic.oup.com
Motivation Gene–gene interaction (GGI) is one of the most popular approaches for finding
and explaining the missing heritability of common complex traits in genome-wide …

A novel fuzzy set based multifactor dimensionality reduction method for detecting gene–gene interaction

HY Jung, S Leem, S Lee, T Park - Computational biology and chemistry, 2016 - Elsevier
Background Gene-gene interaction (GGI) is one of the most popular approaches for finding
the missing heritability of common complex traits in genetic association studies. The …

[HTML][HTML] Exploring the risk factors and clustering patterns of periodontitis in patients with different subtypes of diabetes through machine learning and cluster analysis

A Zhao, Y Chen, H Yang, T Chen… - Acta Odontologica …, 2024 - pmc.ncbi.nlm.nih.gov
Aim To analyse the risk factors contributing to the prevalence of periodontitis among clusters
of patients with diabetes and to examine the clustering patterns of clinical blood biochemical …

[HTML][HTML] Genetic data visualization using literature text-based neural networks: Examples associated with myocardial infarction

J Moon, HF Posada-Quintero, KH Chon - Neural Networks, 2023 - Elsevier
Data visualization is critical to unraveling hidden information from complex and high-
dimensional data. Interpretable visualization methods are critical, especially in the biology …

Identification of gene–environment interactions with marginal penalization

S Zhang, Y Xue, Q Zhang, C Ma, M Wu… - Genetic …, 2020 - Wiley Online Library
Abstract Gene–environment (G–E) interaction analysis has been extensively conducted for
complex diseases. In marginal analysis, the common practice is to conduct likelihood‐based …

Multiple-criteria decision analysis-based multifactor dimensionality reduction for detecting gene–gene interactions

CH Yang, YD Lin, LY Chuang - IEEE Journal of Biomedical and …, 2018 - ieeexplore.ieee.org
Gene-gene interactions (GGIs) are important markers for determining susceptibility to a
disease. Multifactor dimensionality reduction (MDR) is a popular algorithm for detecting …