Designing logical codon reassignment–Expanding the chemistry in biology

A Dumas, L Lercher, CD Spicer, BG Davis - Chemical science, 2015 - pubs.rsc.org
Over the last decade, the ability to genetically encode unnatural amino acids (UAAs) has
evolved rapidly. The programmed incorporation of UAAs into recombinant proteins relies on …

Exploring protein fitness landscapes by directed evolution

PA Romero, FH Arnold - Nature reviews Molecular cell biology, 2009 - nature.com
Directed evolution circumvents our profound ignorance of how a protein's sequence
encodes its function by using iterative rounds of random mutation and artificial selection to …

Fluorinated amino acids: compatibility with native protein structures and effects on protein–protein interactions

M Salwiczek, EK Nyakatura, UIM Gerling… - Chemical Society …, 2012 - pubs.rsc.org
Fluorinated analogues of the canonical α-L-amino acids have gained widespread attention
as building blocks that may endow peptides and proteins with advantageous biophysical …

Selection enhances protein evolvability by increasing mutational robustness and foldability

J Zheng, N Guo, A Wagner - Science, 2020 - science.org
INTRODUCTION Natural selection plays a central role in adaptive evolution, but we still
know little about its role in changing evolvability—the ability to bring forth new and adaptive …

Residue-specific incorporation of non-canonical amino acids into proteins: recent developments and applications

JA Johnson, YY Lu, JA Van Deventer… - Current opinion in chemical …, 2010 - Elsevier
Residue-specific incorporation of non-canonical amino acids into proteins allows facile
alteration and enhancement of protein properties. In this review, we describe recent …

Expanding metabolism for biosynthesis of nonnatural alcohols

K Zhang, MR Sawaya… - Proceedings of the …, 2008 - National Acad Sciences
Nature uses a limited set of metabolites to perform all of the biochemical reactions. To
increase the metabolic capabilities of biological systems, we have expanded the natural …

Optimizing non-natural protein function with directed evolution

EM Brustad, FH Arnold - Current opinion in chemical biology, 2011 - Elsevier
Developing technologies such as unnatural amino acid mutagenesis, non-natural cofactor
engineering, and computational design are generating proteins with novel functions; these …

Ultrahigh‐throughput FACS‐based screening for directed enzyme evolution

G Yang, SG Withers - ChemBioChem, 2009 - Wiley Online Library
Directed enzyme evolution has proven to be a powerful tool for improving a range of
properties of enzymes through consecutive rounds of diversification and selection. However …

Engineered Proteins and Materials Utilizing Residue-Specific Noncanonical Amino Acid Incorporation

T Majekodunmi, D Britton, JK Montclare - Chemical reviews, 2024 - ACS Publications
The incorporation of noncanonical amino acids into proteins and protein-based materials
has significantly expanded the repertoire of available protein structures and chemistries …

Kinetic study of de novo chromophore maturation of fluorescent proteins

R Iizuka, M Yamagishi-Shirasaki, T Funatsu - Biophysical Journal, 2011 - cell.com
Ryo Iizuka, Mai Yamagishi-Shirasaki, Takashi Funatsu. Green fluorescent protein (GFP) has
a chromophore that forms autocatalytically within the folded protein. Although many studies …