Is target-based drug discovery efficient? Discovery and “off-target” mechanisms of all drugs

A Sadri - Journal of medicinal chemistry, 2023 - ACS Publications
Target-based drug discovery is the dominant paradigm of drug discovery; however, a
comprehensive evaluation of its real-world efficiency is lacking. Here, a manual systematic …

NOD signaling and cell death

VJ Heim, CA Stafford, U Nachbur - Frontiers in cell and …, 2019 - frontiersin.org
Innate immune signaling and programmed cell death are intimately linked, and many
signaling pathways can regulate and induce both, transcription of inflammatory mediators or …

Structure of LRRK2 in Parkinson's disease and model for microtubule interaction

CK Deniston, J Salogiannis, S Mathea, DM Snead… - Nature, 2020 - nature.com
Leucine-rich repeat kinase 2 (LRRK2) is the most commonly mutated gene in familial
Parkinson's disease and is also linked to its idiopathic form. LRRK2 has been proposed to …

Network expansion of genetic associations defines a pleiotropy map of human cell biology

I Barrio-Hernandez, J Schwartzentruber… - Nature Genetics, 2023 - nature.com
Interacting proteins tend to have similar functions, influencing the same organismal traits.
Interaction networks can be used to expand the list of candidate trait-associated genes from …

Impaired antibacterial autophagy links granulomatous intestinal inflammation in Niemann–Pick disease type C1 and XIAP deficiency with NOD2 variants in Crohn's …

T Schwerd, S Pandey, HT Yang, K Bagola, E Jameson… - Gut, 2017 - gut.bmj.com
Objective Patients with Niemann–Pick disease type C1 (NPC1), a lysosomal lipid storage
disorder that causes neurodegeneration and liver damage, can present with IBD, but neither …

Receptor-interacting protein kinase 2 (RIPK2) stabilizes c-Myc and is a therapeutic target in prostate cancer metastasis

Y Yan, B Zhou, C Qian, A Vasquez, M Kamra… - Nature …, 2022 - nature.com
Despite progress in prostate cancer (PC) therapeutics, distant metastasis remains a major
cause of morbidity and mortality from PC. Thus, there is growing recognition that preventing …

RIPK protein kinase family: Atypical lives of typical kinases

GD Cuny, A Degterev - Seminars in cell & developmental biology, 2021 - Elsevier
Abstract Receptor Interacting Protein Kinases (RIPKs) are a family of Ser/Thr/Tyr kinases
whose functions, regulation and pathophysiologic roles have remained an enigma for a long …

Disruption of XIAP-RIP2 association blocks NOD2-mediated inflammatory signaling

T Goncharov, S Hedayati, MM Mulvihill… - Molecular cell, 2018 - cell.com
Inflammatory responses mediated by NOD2 rely on RIP2 kinase and ubiquitin ligase XIAP
for the activation of nuclear factor κB (NF-κB), mitogen-activated protein kinases (MAPKs) …

Inhibitors targeting RIPK1/RIPK3: old and new drugs

S Martens, S Hofmans, W Declercq, K Augustyns… - Trends in …, 2020 - cell.com
The scaffolding function of receptor-interacting protein kinase 1 (RIPK1) regulates
prosurvival signaling and inflammatory gene expression, while its kinase activity mediates …

The Identification and Pharmacological Characterization of 6-(tert-Butylsulfonyl)-N-(5-fluoro-1H-indazol-3-yl)quinolin-4-amine (GSK583), a Highly Potent and …

PA Haile, BJ Votta, RW Marquis, MJ Bury… - Journal of medicinal …, 2016 - ACS Publications
RIP2 kinase is a central component of the innate immune system and enables downstream
signaling following activation of the pattern recognition receptors NOD1 and NOD2, leading …