Non-additive association analysis using proxy phenotypes identifies novel cattle syndromes

EGM Reynolds, C Neeley, TJ Lopdell, M Keehan… - Nature Genetics, 2021 - nature.com
Mammalian species carry~ 100 loss-of-function variants per individual,, where~ 1–5 of these
impact essential genes and cause embryonic lethality or severe disease when homozygous …

Uncovering genes underlying coat color variation in indigenous cattle breeds through genome-wide positive selection

D Rajawat, M Panigrahi, SS Nayak… - Animal …, 2023 - Taylor & Francis
The identification of candidate genes related to pigmentation and under selective sweep
provides insights into the genetic basis of pigmentation and the evolutionary forces that have …

Holstein Friesian dairy cattle edited for diluted coat color as a potential adaptation to climate change

G Laible, SA Cole, B Brophy, J Wei, S Leath, S Jivanji… - BMC genomics, 2021 - Springer
Abstract Background High-producing Holstein Friesian dairy cattle have a characteristic
black and white coat, often with large proportions of black. Compared to a light coat color …

Uncovering structural variants in Creole cattle from Guadeloupe and their impact on environmental adaptation through whole genome sequencing

S Ben-Jemaa, M Boussaha, N Mandonnet, P Bardou… - PLoS …, 2024 - journals.plos.org
Structural variants play an important role in evolutionary processes. Besides, they constitute
a large source of inter individual genetic variation that might represent a major factor in the …

[HTML][HTML] Comparison of the genetic characteristics of directly measured and Fourier-transform mid-infrared-predicted bovine milk fatty acids and proteins

KM Tiplady, TJ Lopdell, RG Sherlock, TJJ Johnson… - Journal of Dairy …, 2022 - Elsevier
Fourier-transform mid-infrared (FT-MIR) spectroscopy is a high-throughput and inexpensive
methodology used to evaluate concentrations of fat and protein in dairy cattle milk samples …

Genome-wide association analysis reveals that EDNRB2 causes a dose-dependent loss of pigmentation in ducks

Y Xi, Q Xu, Q Huang, S Ma, Y Wang, C Han, R Zhang… - Bmc Genomics, 2021 - Springer
Background Birds have various plumage color patterns, and spot is a common phenotype.
Herein, we conducted genome-wide association studies (GWAS) in a population of 225 …

Sequence-based genome-wide association study of individual milk mid-infrared wavenumbers in mixed-breed dairy cattle

KM Tiplady, TJ Lopdell, E Reynolds… - Genetics Selection …, 2021 - Springer
Background Fourier-transform mid-infrared (FT-MIR) spectroscopy provides a high-
throughput and inexpensive method for predicting milk composition and other novel traits …

Chromosome-level reference genome for North American bison (Bison bison) and variant database aids in identifying albino mutation

S Stroupe, C Martone, B McCann… - G3: Genes …, 2023 - academic.oup.com
We developed a highly contiguous chromosome-level reference genome for North American
bison to provide a platform to evaluate the conservation, ecological, evolutionary, and …

Genomic analysis reveals the association of KIT and MITF variants with the white spotting in swamp buffaloes

D Dai, EM Sari, J Si, H Ashari, MIA Dagong… - BMC genomics, 2024 - Springer
Background Swamp-type buffaloes with varying degrees of white spotting are found
exclusively in Tana Toraja, South Sulawesi, Indonesia, where spotted buffalo bulls are …

Genome-wide association study reveals genes crucial for coat color production in Vrindavani cattle

S Chhotaray, M Panigrahi, B Bhushan, GK Gaur, T Dutt… - Livestock Science, 2021 - Elsevier
Coat colour and various patterns are the hallmarked qualitative traits studied in cattle as well
as other livestock; however, variation in this trait is resultant of interactions and epistasis of a …