Enzymatic transition states and transition state analog design

VL Schramm - Annual review of biochemistry, 1998 - annualreviews.org
All chemical transformations pass through an unstable structure called the transition state,
which is poised between the chemical structures of the substrates and products. The …

Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes

VL Schramm - Annual review of biochemistry, 2011 - annualreviews.org
Experimental analysis of enzymatic transition-state structures uses kinetic isotope effects
(KIEs) to report on bonding and geometry differences between reactants and the transition …

Toward a Detailed Understanding of Base Excision Repair Enzymes:  Transition State and Mechanistic Analyses of N-Glycoside Hydrolysis and N-Glycoside …

PJ Berti, JAB McCann - Chemical reviews, 2006 - ACS Publications
This review focuses on the chemistry performed by base excision repair (BER) enzymes,
enzymes that remove nucleobases from DNA in the first step of the repair of many types of …

One-third-the-sites transition-state inhibitors for purine nucleoside phosphorylase

RW Miles, PC Tyler, RH Furneaux… - Biochemistry, 1998 - ACS Publications
Genetic defects in human purine nucleoside phosphorylase cause T-cell deficiency as the
major phenotype. It has been proposed that efficient inhibitors of the enzyme might intervene …

Analysis of PUGNAc and NAG-thiazoline as Transition State Analogues for Human O-GlcNAcase:  Mechanistic and Structural Insights into Inhibitor Selectivity and …

GE Whitworth, MS Macauley, KA Stubbs… - Journal of the …, 2007 - ACS Publications
O-GlcNAcase catalyzes the cleavage of β-O-linked 2-acetamido-2-deoxy-β-d-
glucopyranoside (O-GlcNAc) from serine and threonine residues of post-translationally …

Transition State Analysis for Human and Plasmodium falciparum Purine Nucleoside Phosphorylases

A Lewandowicz, VL Schramm - Biochemistry, 2004 - ACS Publications
Recent studies have shown that Plasmodium falciparum is sensitive to a purine salvage
block at purine nucleoside phosphorylase (PNP) and that human PNP is a target for T-cell …

Enzymatic transition state theory and transition state analogue design

VL Schramm - Journal of Biological Chemistry, 2007 - ASBMB
The incredible catalytic rate enhancements caused by enzymes led Linus Pauling (1) to
suggest that enzymes bind tightly to substrates distorted toward the transition state, thereby …

Synthesis, molecular modeling, quantum mechanical calculations and ADME estimation studies of benzimidazole-oxadiazole derivatives as potent antifungal agents

UA Çevik, I Celik, A Işık, RR Pillai, TE Tallei… - Journal of Molecular …, 2022 - Elsevier
In this study, a series of new 3-((5-(4-(5-substitue-1H-benz [d] imidazol-2-yl) phenyl)-1, 3, 4-
oxadiazol-2-yl) thio)-1-phenyl propane-1-on (4a-4d) derivatives has been designed and …

Targeting the interplay between MMP-2, CA II and VEGFR-2 via new sulfonamide-tethered isomeric triazole hybrids; Microwave-assisted synthesis, computational …

MR Aouad, MA Almehmadi, FF Albelwi, M Teleb… - Bioorganic …, 2022 - Elsevier
Recently, the interest in targeting metalloenzymes is obviously growing for halting various
tumor progression events and surmounting the resistance due to routine chemotherapy …

Enzymatic transition states: thermodynamics, dynamics and analogue design

VL Schramm - Archives of biochemistry and biophysics, 2005 - Elsevier
Kinetic isotope effects and computational chemistry have defined the transition state
structures for several members of the N-ribosyltransferase family. Transition state analogues …