[HTML][HTML] Molecular modeling in drug discovery

TI Adelusi, AQK Oyedele, ID Boyenle… - Informatics in Medicine …, 2022 - Elsevier
With the financial requirements and high time associated with bringing a commercial drug to
the market, the application of computer-aided drug design has been recognized as a …

Molecular dynamics simulations and novel drug discovery

X Liu, D Shi, S Zhou, H Liu, H Liu… - Expert opinion on drug …, 2018 - Taylor & Francis
Introduction: Molecular dynamics (MD) simulations can provide not only plentiful dynamical
structural information on biomacromolecules but also a wealth of energetic information …

Immunoinformatics characterization of SARS-CoV-2 spike glycoprotein for prioritization of epitope based multivalent peptide vaccine

S Ismail, S Ahmad, SS Azam - Journal of Molecular Liquids, 2020 - Elsevier
The COVID-19 pandemic caused by SARS-CoV-2 is a public health emergency of
international concern and thus calling for the development of effective and safe therapeutics …

In silico approach for potential antimicrobial agents through antiviral, molecular docking, molecular dynamics, pharmacokinetic and bioactivity predictions of …

SMA Kawsar, MA Hosen, Y El Bakri… - Arab Journal of Basic …, 2022 - Taylor & Francis
Carbohydrates derivatives played an important and vital role in a large part to design new
potential drug against various pathogens, in medicinal chemistry. Also, monosaccharide …

Elucidating the bioremediation potential of laccase and peroxidase enzymes from Bacillus ligniniphilus L1 in antibiotic degradation: A computationally guided study

MZ Nawaz, HR Khalid, MU Mirza, L Xu, SZ Haider… - Bioresource …, 2024 - Elsevier
This study showcased the antibiotic degradation abilities of laccase and catalase-
peroxidase from Bacillus ligniniphilus L1, an extremophile, against 18 common antibiotics …

Vaccinomics to design a novel single chimeric subunit vaccine for broad-spectrum immunological applications targeting nosocomial Enterobacteriaceae pathogens

S Ismail, S Ahmad, SS Azam - European Journal of Pharmaceutical …, 2020 - Elsevier
Healthcare associated infections (HAIs) are major cause of elevated mortality, morbidity, and
high healthcare costs. Development of a vaccine targeting these pathogens could benefit in …

Alisol C 23-acetate might be a lead compound of potential lipase inhibitor from Alismatis Rhizoma: Screening, identification and molecular dynamics simulation

T Gao, R Yan, N Fang, L He, Z Duan, J Wang… - International Journal of …, 2024 - Elsevier
Alismatis Rhizoma (AR), a traditional Chinese medicine for treating obesity in traditional
Chinese medicine clinic, is recognized as a promising source of lead compounds of lipase …

Combating tigecycline resistant Acinetobacter baumannii: A leap forward towards multi-epitope based vaccine discovery

S Ahmad, KE Ranaghan, SS Azam - European Journal of Pharmaceutical …, 2019 - Elsevier
Global emergence of Tigecycline resistant Acinetobacter baumannii (TRAB) is on the
horizon and poses a very serious threat to human health. There is a pressing demand for …

Toxicological effects of atenolol and venlafaxine on zebrafish tissues: Bioaccumulation, DNA hypomethylation, and molecular mechanism

W Lin, Z Huang, S Ping, S Zhang, X Wen, Y He… - Environmental …, 2022 - Elsevier
The beta-blocker atenolol (ATE), and the selective serotonin and norepinephrine reuptake
inhibitor, venlafaxine (VEN) are frequently detected in municipal wastewater effluents, but …

Shape-based machine learning models for the potential novel COVID-19 protease inhibitors assisted by molecular dynamics simulation

A Nayarisseri, R Khandelwal… - Current topics in …, 2020 - ingentaconnect.com
Background: The vast geographical expansion of novel coronavirus and an increasing
number of COVID-19 affected cases have overwhelmed health and public health services …