Recent technical advances in sample preparation for single-particle cryo-EM

Y Xu, S Dang - Frontiers in molecular biosciences, 2022 - frontiersin.org
Cryo-sample preparation is a vital step in the process of obtaining high-resolution structures
of macromolecules by using the single-particle cryo–electron microscopy (cryo-EM) method; …

Cyanobacterial sigma factors: Current and future applications for biotechnological advances

A Srivastava, ML Summers, R Sobotka - Biotechnology advances, 2020 - Elsevier
A sigma (σ) factor is a constituent of bacterial RNA polymerase that guides the holoenzyme
to promoter sequences and initiates transcription. In addition to a primary housekeeping σ …

Stepwise promoter melting by bacterial RNA polymerase

J Chen, C Chiu, S Gopalkrishnan, AY Chen… - Molecular cell, 2020 - cell.com
Transcription initiation requires formation of the open promoter complex (RPo). To generate
RPo, RNA polymerase (RNAP) unwinds the DNA duplex to form the transcription bubble …

Structural basis of three different transcription activation strategies adopted by a single regulator SoxS

J Shi, L Wang, A Wen, F Wang, Y Zhang… - Nucleic Acids …, 2022 - academic.oup.com
Transcription activation is established through extensive protein–protein and protein–DNA
interactions that allow an activator to engage and remodel RNA polymerase. SoxS, a global …

Structure of the transcription open complex of distinct σI factors

J Li, H Zhang, D Li, YJ Liu, EA Bayer, Q Cui… - Nature …, 2023 - nature.com
Bacterial σI factors of the σ70-family are widespread in Bacilli and Clostridia and are
involved in the heat shock response, iron metabolism, virulence, and carbohydrate sensing …

CueR activates transcription through a DNA distortion mechanism

C Fang, SJ Philips, X Wu, K Chen, J Shi, L Shen… - Nature chemical …, 2021 - nature.com
The MerR-family transcription factors (TFs) are a large group of bacterial proteins
responding to cellular metal ions and multiple antibiotics by binding within central RNA …

Structural basis of ribosomal RNA transcription regulation

Y Shin, MZ Qayyum, D Pupov, D Esyunina… - Nature …, 2021 - nature.com
Ribosomal RNA (rRNA) is most highly expressed in rapidly growing bacteria and is
drastically downregulated under stress conditions by the global transcriptional regulator …

[HTML][HTML] Structural insights into RNA-mediated transcription regulation in bacteria

S Dey, C Batisse, J Shukla, MW Webster, M Takacs… - Molecular Cell, 2022 - cell.com
RNA can regulate its own synthesis without auxiliary proteins. For example, U-rich RNA
sequences signal RNA polymerase (RNAP) to pause transcription and are required for …

General transcription factor from Escherichia coli with a distinct mechanism of action

N Vasilyev, MMJ Liu, V Epshtein, I Shamovsky… - Nature Structural & …, 2024 - nature.com
Gene expression in Escherichia coli is controlled by well-established mechanisms that
activate or repress transcription. Here, we identify CedA as an unconventional transcription …

Structural basis of transcription activation by Rob, a pleiotropic AraC/XylS family regulator

J Shi, F Wang, F Li, L Wang, Y Xiong… - Nucleic acids …, 2022 - academic.oup.com
Rob, which serves as a paradigm of the large AraC/XylS family transcription activators,
regulates diverse subsets of genes involved in multidrug resistance and stress response …