Computational/in silico methods in drug target and lead prediction

FE Agamah, GK Mazandu, R Hassan… - Briefings in …, 2020 - academic.oup.com
Drug-like compounds are most of the time denied approval and use owing to the
unexpected clinical side effects and cross-reactivity observed during clinical trials. These …

Network pharmacology: the next paradigm in drug discovery

AL Hopkins - Nature chemical biology, 2008 - nature.com
The dominant paradigm in drug discovery is the concept of designing maximally selective
ligands to act on individual drug targets. However, many effective drugs act via modulation …

Exploration of type II binding mode: A privileged approach for kinase inhibitor focused drug discovery?

Z Zhao, H Wu, L Wang, Y Liu, S Knapp, Q Liu… - ACS chemical …, 2014 - ACS Publications
The ATP site of kinases displays remarkable conformational flexibility when accommodating
chemically diverse small molecule inhibitors. The so-called activation segment, whose …

From in silico target prediction to multi-target drug design: current databases, methods and applications

A Koutsoukas, B Simms, J Kirchmair, PJ Bond… - Journal of …, 2011 - Elsevier
Given the tremendous growth of bioactivity databases, the use of computational tools to
predict protein targets of small molecules has been gaining importance in recent years …

Measuring and interpreting the selectivity of protein kinase inhibitors

LA Smyth, I Collins - Journal of chemical biology, 2009 - Springer
Protein kinase inhibitors are a well-established class of clinically useful drugs, particularly
for the treatment of cancer. Achieving inhibitor selectivity for particular protein kinases often …

Anticancer drugs and cardiotoxicity: insights and perspectives in the era of targeted therapy

E Raschi, V Vasina, MG Ursino, G Boriani… - Pharmacology & …, 2010 - Elsevier
Drug-induced cardiotoxicity is emerging as an important issue among cancer survivors. For
several decades, this topic was almost exclusively associated with anthracyclines, for which …

In-Silico Approaches to Multi-target Drug Discovery: Computer Aided Multi-target Drug Design, Multi-target Virtual Screening

XH Ma, Z Shi, C Tan, Y Jiang, ML Go, BC Low… - Pharmaceutical …, 2010 - Springer
Multi-target drugs against selective multiple targets improve therapeutic efficacy, safety and
resistance profiles by collective regulations of a primary therapeutic target together with …

Elimination of human lung cancer stem cells through targeting of the stem cell factor–c-kit autocrine signaling loop

V Levina, A Marrangoni, T Wang, S Parikh, Y Su… - Cancer research, 2010 - AACR
Cancer stem cells (CSC) are thought to be responsible for tumor initiation and tumor
regeneration after chemotherapy. Previously, we showed that chemotherapy of non–small …

[HTML][HTML] The dynamics of signaling as a pharmacological target

M Behar, D Barken, SL Werner, A Hoffmann - Cell, 2013 - cell.com
Highly networked signaling hubs are often associated with disease, but targeting them
pharmacologically has largely been unsuccessful in the clinic because of their functional …

Methods and applications of structure based pharmacophores in drug discovery

S Pirhadi, F Shiri, JB Ghasemi - Current topics in medicinal …, 2013 - ingentaconnect.com
A pharmacophore model does not describe a real molecule or a real association of
functional groups but illustrates a molecular recognition of a biological target shared by a …