Discovery and significance of protein-protein interactions in health and disease

JF Greenblatt, BM Alberts, NJ Krogan - Cell, 2024 - cell.com
The identification of individual protein-protein interactions (PPIs) began more than 40 years
ago, using protein affinity chromatography and antibody co-immunoprecipitation. As new …

Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes

A Cesnik, LV Schaffer, I Gaur, M Jain… - Annual Review of …, 2024 - annualreviews.org
While the primary sequences of human proteins have been cataloged for over a decade,
determining how these are organized into a dynamic collection of multiprotein assemblies …

DNA damage-induced proteasome phosphorylation controls substrate recognition and facilitates DNA repair

X Zhang, T Zhu, X Li, H Zhao, S Lin, J Huang… - Proceedings of the …, 2024 - pnas.org
Upon DNA damage, numerous proteins are targeted for ubiquitin-dependent proteasomal
degradation, which is an integral part of the DNA repair program. Although details of the …

A foundational atlas of autism protein interactions reveals molecular convergence

B Wang, R Vartak, Y Zaltsman, ZZC Naing, K Hennick… - 2023 - papers.ssrn.com
Translating high-confidence (hc) autism spectrum disorder (ASD) genes into viable
treatment targets remains elusive. We constructed a foundational protein-protein interaction …

Mouse models to explore the biological and organismic role of DNA polymerase beta

RW Sobol - Environmental and Molecular Mutagenesis, 2024 - Wiley Online Library
Gene knock‐out (KO) mouse models for DNA polymerase beta (Polβ) revealed that loss of
Polβ leads to neonatal lethality, highlighting the critical organismic role for this DNA …

Comparative sequencing study of mismatch repair and homology‐directed repair genes in endometrial cancer and breast cancer patients from Kazakhstan

Y Zheng, N Vdovichenko, P Schürmann… - … Journal of Cancer, 2025 - Wiley Online Library
Endometrial cancer has been associated with pathogenic variants in mismatch repair (MMR)
genes, especially in the context of the hereditary Lynch Syndrome. More recently …

Bivalent chromatin accommodates survivin and BRG1/SWI complex to activate DNA damage response in CD4+ cells

V Chandrasekaran, KME Andersson… - Cell Communication and …, 2024 - Springer
Background Bivalent regions of chromatin (BvCR) are characterized by trimethylated lysine
4 (H3K4me3) and lysine 27 on histone H3 (H3K27me3) deposition which aid gene …

[HTML][HTML] Oncometabolite 2-hydroxyglutarate suppresses basal protein levels of DNA polymerase beta that enhances alkylating agent and PARG inhibition induced …

KM Saville, RQ Al-Rahahleh, AH Siddiqui, ME Andrews… - DNA repair, 2024 - Elsevier
Mutations in isocitrate dehydrogenase isoform 1 (IDH1) are primarily found in secondary
glioblastoma (GBM) and low-grade glioma but are rare in primary GBM. The standard …

Poly‐ADP‐ribosylation dynamics, signaling, and analysis

RQ Al‐Rahahleh, RW Sobol - Environmental and Molecular …, 2024 - Wiley Online Library
ADP‐ribosylation is a reversible post‐translational modification that plays a role as a
signaling mechanism in various cellular processes. This modification is characterized by its …

ProCyon: A multimodal foundation model for protein phenotypes

O Queen, Y Huang, R Calef, V Giunchiglia, T Chen… - bioRxiv, 2024 - biorxiv.org
Understanding the roles of human proteins remains a major challenge, with approximately
20% of human proteins lacking known functions and more than 40% missing context …