A review of multimodal deep learning methods for genomic-enabled prediction in plant breeding

OA Montesinos-López, M Chavira-Flores, Kismiantini… - Genetics, 2024 - academic.oup.com
Deep learning methods have been applied when working to enhance the prediction
accuracy of traditional statistical methods in the field of plant breeding. Although deep …

Advancing Dairy and Beef Genetics Through Genomic Technologies

P Banerjee, WJS Diniz - Veterinary Clinics: Food Animal …, 2024 - vetfood.theclinics.com
The livestock industry is a key player in addressing the current challenges facing global food
security. 1 Challenges are not only related to the forecasted increased demand for animal …

Improving the accuracy of genomic prediction in dairy cattle using the biologically annotated neural networks framework

X Wang, S Shi, MY Ali Khan, Z Zhang… - Journal of Animal Science …, 2024 - Springer
Background Biologically annotated neural networks (BANNs) are feedforward Bayesian
neural network models that utilize partially connected architectures based on SNP-set …

Prenatal environmental stressors and DNA methylation levels in placenta and peripheral tissues of mothers and neonates evaluated by applying artificial neural …

A Stoccoro, V Nicolì, F Coppedè, E Grossi, G Fedrizzi… - Genes, 2023 - mdpi.com
Exposure to environmental stressors during pregnancy plays an important role in influencing
subsequent susceptibility to certain chronic diseases through the modulation of epigenetic …

Plant breeding simulations with AlphaSimR

J Bančič, P Greenspoon, RC Gaynor… - Crop Science, 2025 - Wiley Online Library
Plant breeding plays a crucial role in the development of high‐performing crop varieties that
meet the demands of society. Emerging breeding techniques offer the potential to improve …

[HTML][HTML] Quantifying the impact of dynamic plant-environment interactions on metabolic regulation

A Kitashova, V Brodsky, P Chaturvedi, I Pierides… - Journal of Plant …, 2023 - Elsevier
A plant's genome encodes enzymes, transporters and many other proteins which constitute
metabolism. Interactions of plants with their environment shape their growth, development …

Combining host and rumen metagenome profiling for selection in sheep: prediction of methane, feed efficiency, production, and health traits

MK Hess, L Zetouni, AS Hess, J Budel… - Genetics Selection …, 2023 - Springer
Background Rumen microbes break down complex dietary carbohydrates into energy
sources for the host and are increasingly shown to be a key aspect of animal performance …

Genomic prediction for sugarcane diseases including hybrid Bayesian-machine learning approaches

C Chen, SA Bhuiyan, E Ross, O Powell… - Frontiers in Plant …, 2024 - frontiersin.org
Sugarcane smut and Pachymetra root rots are two serious diseases of sugarcane, with
susceptible infected crops losing over 30% of yield. A heritable component to both diseases …

Including microbiome information in a multi-trait genomic evaluation: a case study on longitudinal growth performance in beef cattle

M Martínez-Álvaro, J Mattock… - Genetics Selection …, 2024 - Springer
Background Growth rate is an important component of feed conversion efficiency in cattle
and varies across the different stages of the finishing period. The metabolic effect of the …

[HTML][HTML] Breeding evaluations in aquaculture using neural networks

C Palaiokostas - Aquaculture Reports, 2024 - Elsevier
Deep learning comes with a portfolio of highly flexible models, known as neural networks
(NNs), capable of solving various problems and setting new high standards for prediction …