Genome-wide analysis of histone modifications can contribute to the identification of candidate cis-regulatory regions in the threespine stickleback fish

G Okude, YY Yamasaki, A Toyoda, S Mori, J Kitano - BMC genomics, 2024 - Springer
Background Cis-regulatory mutations often underlie phenotypic evolution. However,
because identifying the locations of promoters and enhancers in non-coding regions is …

A graph-based goat pangenome reveals structural variations involved in domestication and adaptation

P Bian, J Li, S Zhou, X Wang, M Gong… - Molecular Biology …, 2024 - academic.oup.com
Pangenomes can facilitate a deeper understanding of genome complexity. Using de novo
phased long-read assemblies of eight representative goat breeds, we constructed a graph …

Hybrid assembly and comparative genomics unveil insights into the evolution and biology of the red-legged partridge

A Eleiwa, J Nadal, E Vilaprinyo, A Marin-Sanguino… - Scientific Reports, 2024 - nature.com
The red-legged partridge Alectoris rufa plays a crucial role in the ecosystem of southwestern
Europe, and understanding its genetics is vital for conservation and management. Here we …

[PDF][PDF] On genocentricity and genomocentricity in basic living systems: microorganisms, plants, animals

VI Glazko, GY Kosovsky, TT Glazko - Sel'skokhozyaistvennaya …, 2024 - researchgate.net
The development of genomics and pangenomics is becoming increasingly relevant for the
development of new methods for solving traditional problems of control and directed …

Genome assembly of the dyeing poison frog provides insights into the dynamics of transposable element and genome-size evolution

C Dittrich, F Hoelzl, S Smith… - Genome Biology and …, 2024 - academic.oup.com
Genome size varies greatly across the tree of life and transposable elements are an
important contributor to this variation. Among vertebrates, amphibians display the greatest …

Effects of Arboviral Infections on Transposable Element Transcript Levels in Aedes aegypti

C Garambois, M Boulesteix… - Genome Biology and …, 2024 - academic.oup.com
Transposable elements are mobile repeated sequences found in all genomes.
Transposable elements are controlled by RNA interference pathways in most organisms …

Genetic basis and expression of ventral colour in polymorphic common lizards

H Recknagel, HG Leitão, KR Elmer - Molecular Ecology, 2024 - Wiley Online Library
Colour is an important visual cue that can correlate with sex, behaviour, life history or
ecological strategies, and has evolved divergently and convergently across animal lineages …

FishTEDB 2.0: an update fish transposable element (TE) database with new functions to facilitate TE research

F Shao, M Zeng, X Xu, H Zhang, Z Peng - Database, 2024 - academic.oup.com
We launched the initial version of FishTEDB in 2018, which aimed to establish an open-
source, user-friendly, data-rich transposable element (TE) database. Over the past 5 years …

An almost chromosome-level assembly and annotation of the Alectoris rufa genome

A Eleiwa, J Nadal, E Vilaprinyo, A Marin-Sanguino… - bioRxiv, 2024 - biorxiv.org
The red-legged partridge, Alectoris rufa (n= 38 chromosomes) plays a crucial role in the
ecosystem of southwestern Europe, and understanding its genetics is vital for conservation …

[PDF][PDF] О ГЕНО-И ГЕНОМОЦЕНТРИЧНОСТИ ФУНДАМЕНТАЛЬНЫХ БИОЛОГИЧЕСКИХ СИСТЕМ: МИКРООРГАНИЗМЫ, РАСТЕНИЯ, ЖИВОТНЫЕ

ВИ ГЛАЗКО, ГЮ КОСОВСКИЙ, ТТ ГЛАЗКО - researchgate.net
Развитие геномики и пангеномики становится все более актуальным для разработок
новых методов решения традиционных проблем контроля и направленного влияния на …