[HTML][HTML] Biosynthetic potential of the global ocean microbiome
Natural microbial communities are phylogenetically and metabolically diverse. In addition to
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
underexplored organismal groups, this diversity encompasses a rich discovery potential for …
Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation
The study of ancient DNA (aDNA) from sediments (sed aDNA) offers great potential for
paleoclimate interpretation, and has recently been applied as a tool to characterise past …
paleoclimate interpretation, and has recently been applied as a tool to characterise past …
Critical assessment of metagenome interpretation: the second round of challenges
Evaluating metagenomic software is key for optimizing metagenome interpretation and focus
of the Initiative for the Critical Assessment of Metagenome Interpretation (CAMI). The CAMI II …
of the Initiative for the Critical Assessment of Metagenome Interpretation (CAMI). The CAMI II …
Genomes OnLine database (GOLD) v. 7: updates and new features
S Mukherjee, D Stamatis, J Bertsch… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Genomes Online Database (GOLD)(https://gold. jgi. doe. gov) is an open online
resource, which maintains an up-to-date catalog of genome and metagenome projects in the …
resource, which maintains an up-to-date catalog of genome and metagenome projects in the …
Charting the complexity of the marine microbiome through single-cell genomics
Marine bacteria and archaea play key roles in global biogeochemistry. To improve our
understanding of this complex microbiome, we employed single-cell genomics and a …
understanding of this complex microbiome, we employed single-cell genomics and a …
Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns
JL Weissman, S Hou… - Proceedings of the …, 2021 - National Acad Sciences
Maximal growth rate is a basic parameter of microbial lifestyle that varies over several orders
of magnitude, with doubling times ranging from a matter of minutes to multiple days. Growth …
of magnitude, with doubling times ranging from a matter of minutes to multiple days. Growth …
Biodiversity of microorganisms in the Baltic Sea: the power of novel methods in the identification of marine microbes
H Mazur-Marzec, AF Andersson… - FEMS Microbiology …, 2024 - academic.oup.com
Until recently, the data on the diversity of the entire microbial community from the Baltic Sea
were relatively rare and very scarce. However, modern molecular methods have provided …
were relatively rare and very scarce. However, modern molecular methods have provided …
Global analysis of the biosynthetic chemical space of marine prokaryotes
Background Marine prokaryotes are a rich source of novel bioactive secondary metabolites
for drug discovery. Recent genome mining studies have revealed their great potential to bio …
for drug discovery. Recent genome mining studies have revealed their great potential to bio …
The Ocean Gene Atlas v2. 0: online exploration of the biogeography and phylogeny of plankton genes
C Vernette, J Lecubin, P Sánchez… - Nucleic Acids …, 2022 - academic.oup.com
Testing hypothesis about the biogeography of genes using large data resources such as
Tara Oceans marine metagenomes and metatranscriptomes requires significant hardware …
Tara Oceans marine metagenomes and metatranscriptomes requires significant hardware …
Gene expression changes and community turnover differentially shape the global ocean metatranscriptome
G Salazar, L Paoli, A Alberti, J Huerta-Cepas… - Cell, 2019 - cell.com
Ocean microbial communities strongly influence the biogeochemistry, food webs, and
climate of our planet. Despite recent advances in understanding their taxonomic and …
climate of our planet. Despite recent advances in understanding their taxonomic and …