Transcription-mediated replication hindrance: a major driver of genome instability

B Gómez-González, A Aguilera - Genes & development, 2019 - genesdev.cshlp.org
Genome replication involves dealing with obstacles that can result from DNA damage but
also from chromatin alterations, topological stress, tightly bound proteins or non-B DNA …

The contribution of co-transcriptional RNA: DNA hybrid structures to DNA damage and genome instability

S Hamperl, KA Cimprich - DNA repair, 2014 - Elsevier
Accurate DNA replication and DNA repair are crucial for the maintenance of genome
stability, and it is generally accepted that failure of these processes is a major source of DNA …

A targeting modality for destruction of RNA polymerase I that possesses anticancer activity

K Peltonen, L Colis, H Liu, R Trivedi, MS Moubarek… - Cancer cell, 2014 - cell.com
We define the activity and mechanisms of action of a small molecule lead compound for
cancer targeting. We show that the compound, BMH-21, has wide and potent …

A ribosome assembly stress response regulates transcription to maintain proteome homeostasis

B Albert, IC Kos-Braun, AK Henras, C Dez, MP Rueda… - elife, 2019 - elifesciences.org
Ribosome biogenesis is a complex and energy-demanding process requiring tight
coordination of ribosomal RNA (rRNA) and ribosomal protein (RP) production. Given the …

Genome-wide map of R-loop-induced damage reveals how a subset of R-loops contributes to genomic instability

L Costantino, D Koshland - Molecular cell, 2018 - cell.com
DNA-RNA hybrids associated with R-loops promote DNA damage and genomic instability.
The capacity of hybrids at different genomic sites to cause DNA damage was not known, and …

Transcription as a source of genome instability

N Kim, S Jinks-Robertson - Nature Reviews Genetics, 2012 - nature.com
Alterations in genome sequence and structure contribute to somatic disease, affect the
fitness of subsequent generations and drive evolutionary processes. The crucial roles of …

Genome-wide distribution of RNA-DNA hybrids identifies RNase H targets in tRNA genes, retrotransposons and mitochondria

A El Hage, S Webb, A Kerr, D Tollervey - PLoS genetics, 2014 - journals.plos.org
During transcription, the nascent RNA can invade the DNA template, forming extended RNA-
DNA duplexes (R-loops). Here we employ ChIP-seq in strains expressing or lacking RNase …

Basic mechanisms in RNA polymerase I transcription of the ribosomal RNA genes

SJ Goodfellow, JCBM Zomerdijk - Epigenetics: development and disease, 2012 - Springer
Abstract RNA Polymerase (Pol) I produces ribosomal (r) RNA, an essential component of the
cellular protein synthetic machinery that drives cell growth, underlying many fundamental …

Transcription-dependent dynamic supercoiling is a short-range genomic force

F Kouzine, A Gupta, L Baranello, D Wojtowicz… - Nature structural & …, 2013 - nature.com
Transcription has the capacity to mechanically modify DNA topology, DNA structure and
nucleosome arrangement. Resulting from ongoing transcription, these modifications in turn …

Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription

R Bermejo, MS Lai, M Foiani - Molecular cell, 2012 - cell.com
DNA and RNA polymerases clash along the genome as they compete for the same DNA
template. Cells have evolved specialized strategies to prevent and resolve replication and …