Advancing targeted protein degradation via multiomics profiling and artificial intelligence

M Duran-Frigola, M Cigler… - Journal of the American …, 2023 - ACS Publications
Only around 20% of the human proteome is considered to be druggable with small-molecule
antagonists. This leaves some of the most compelling therapeutic targets outside the reach …

Recent advances and challenges in protein structure prediction

CX Peng, F Liang, YH Xia, KL Zhao… - Journal of Chemical …, 2023 - ACS Publications
Artificial intelligence has made significant advances in the field of protein structure prediction
in recent years. In particular, DeepMind's end-to-end model, AlphaFold2, has demonstrated …

MolAICal: a soft tool for 3D drug design of protein targets by artificial intelligence and classical algorithm

Q Bai, S Tan, T Xu, H Liu, J Huang… - Briefings in …, 2021 - academic.oup.com
Deep learning is an important branch of artificial intelligence that has been successfully
applied into medicine and two-dimensional ligand design. The three-dimensional (3D) …

COVID-19 Docking Server: A meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19

R Kong, G Yang, R Xue, M Liu, F Wang, J Hu… - …, 2020 - academic.oup.com
Motivation The coronavirus disease 2019 (COVID-19) caused by a new type of coronavirus
has been emerging from China and led to thousands of death globally since December …

In Silico Investigation on the Interaction of Chiral Phytochemicals from Opuntia ficus-indica with SARS-CoV-2 Mpro

C Vicidomini, V Roviello, GN Roviello - Symmetry, 2021 - mdpi.com
Opuntia ficus-indica is a cactaceous plant native to America but, nowadays, widely found
worldwide, having been the most common domesticated species of cactus grown as a crop …

NLRP6 potentiates PI3K/AKT signalling by promoting autophagic degradation of p85α to drive tumorigenesis

F Zhi, B Li, C Zhang, F Xia, R Wang, W Xie… - Nature …, 2023 - nature.com
Abstract The PI3K/AKT pathway plays an essential role in tumour development. NOD-like
receptors (NLRs) regulate innate immunity and are implicated in cancer, but whether they …

nCoVDock2: a docking server to predict the binding modes between COVID-19 targets and its potential ligands

K Liu, X Lu, H Shi, X Xu, R Kong… - Nucleic Acids …, 2023 - academic.oup.com
The rapid emergence of SARS-CoV-2 variants with multi-sites mutations is considered as a
major obstacle for the development of drugs and vaccines. Although most of the functional …

Evidence of protein binding by a nucleopeptide based on a thyminedecorated L-diaminopropanoic acid through CD and in silico studies

V Roviello, D Musumeci, A Mokhir… - Current Medicinal …, 2021 - ingentaconnect.com
Background: Nucleopeptides are chimeric compounds of biomedical importance carrying
DNA nucleobases anchored to peptide backbones with the ascertained capacity to bind …

Peptide modelling and screening against human ACE2 and spike glycoprotein RBD of SARS-CoV-2

SB Rathod, PB Prajapati, LB Punjabi, KN Prajapati… - In silico …, 2020 - Springer
Abstract Outbreak of Coronavirus Disease 2019 (COVID-19) has become a great challenge
for scientific community globally. Virus enters cell through spike glycoprotein fusion with …

[HTML][HTML] ADAM8 deficiency in macrophages promotes cardiac repair after myocardial infarction via ANXA2-mTOR-autophagy pathway

Z Ji, J Guo, R Zhang, W Zuo, Y Xu, Y Qu, Z Tao… - Journal of Advanced …, 2024 - Elsevier
Introduction A disintegrin and metalloproteinase 8 (ADAM8), a crucial regulator in
macrophages, is closely associated with cardiovascular disease progression. Objectives …