Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

P Csermely, R Palotai, R Nussinov - Trends in biochemical sciences, 2010 - cell.com
Single molecule and NMR measurements of protein dynamics increasingly uncover the
complexity of binding scenarios. Here, we describe an extended conformational selection …

Water mediation in protein folding and molecular recognition

Y Levy, JN Onuchic - Annu. Rev. Biophys. Biomol. Struct., 2006 - annualreviews.org
Water is essential for life in many ways, and without it biomolecules might no longer truly be
biomolecules. In particular, water is important to the structure, stability, dynamics, and …

The efficiency of multi-target drugs: the network approach might help drug design

P Csermely, V Agoston, S Pongor - Trends in pharmacological sciences, 2005 - cell.com
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and rational drug design, the number of successful single-target drugs did not …

Intrinsic disorder-based protein interactions and their modulators

VN Uversky - Current pharmaceutical design, 2013 - ingentaconnect.com
It is clear now that proteins lacking ordered structure, generally known as intrinsically
disordered proteins (IDPs), possess numerous biological functions that complement …

Multitude of binding modes attainable by intrinsically disordered proteins: a portrait gallery of disorder-based complexes

VN Uversky - Chemical Society Reviews, 2011 - pubs.rsc.org
Proteins are constantly involved in the multitude of various interactions creating
sophisticated networks which define and control all (or almost all) the biological processes …

[HTML][HTML] Network analysis of protein dynamics

C Böde, IA Kovács, MS Szalay, R Palotai… - FEBS letters, 2007 - Elsevier
The network paradigm is increasingly used to describe the topology and dynamics of
complex systems. Here, we review the results of the topological analysis of protein structures …

Promiscuous drugs compared to selective drugs (promiscuity can be a virtue)

SK Mencher, LG Wang - BMC clinical pharmacology, 2005 - Springer
Background The word selectivity describes a drug's ability to affect a particular cell
population in preference to others. As part of the current state of art in the search for new …

GroEL-mediated protein folding: making the impossible, possible

Z Lin, HS Rye - Critical reviews in biochemistry and molecular …, 2006 - Taylor & Francis
Protein folding is a spontaneous process that is essential for life, yet the concentrated and
complex interior of a cell is an inherently hostile environment for the efficient folding of many …

Functional and structural characterization of a protein based on analysis of its hydrogen bonding network by hydrogen bonding plot

Z Bikadi, L Demko, E Hazai - Archives of Biochemistry and Biophysics, 2007 - Elsevier
Knowledge of the relationship between protein's structure and its dynamic behavior is
essential for understanding protein function. In this study, the description of a protein three …