Orchestrating single-cell analysis with Bioconductor

RA Amezquita, ATL Lun, E Becht, VJ Carey… - Nature …, 2020 - nature.com
Recent technological advancements have enabled the profiling of a large number of
genome-wide features in individual cells. However, single-cell data present unique …

Recent advances in single-cell metabolomics based on mass spectrometry

Q Liu, S Martínez-Jarquín, R Zenobi - CCS Chemistry, 2023 - chinesechemsoc.org
Cellular heterogeneity is essential for the physiological functions of organisms, and precise
interpretation of the relevant biological mechanisms involved requires accurate …

Ultrasensitive single cell metabolomics by capillary electrophoresis–mass spectrometry with a thin-walled tapered emitter and large-volume dual sample …

T Kawai, N Ota, K Okada, A Imasato, Y Owa… - Analytical …, 2019 - ACS Publications
Single cell metabolome analysis is essential for studying microscale life phenomena such
as neuronal networks and tumor microenvironments. Capillary electrophoresis–mass …

On-Chip analysis of protein secretion from single cells using microbead biosensors

DF Cedillo-Alcantar, R Rodriguez-Moncayo… - ACS …, 2023 - ACS Publications
The profiling of the effector functions of single immune cells─ including cytokine secretion─
can lead to a deeper understanding of how the immune system operates and to potential …

Connectivity Network Feature Sharing in Single-Cell RNA Sequencing Data Identifies Rare Cells

S Wang, H Li, Y Liu, S Pang, S Qiao, J Su… - Journal of Chemical …, 2024 - ACS Publications
Single-cell RNA sequencing is a valuable technique for identifying diverse cell subtypes. A
key challenge in this process is that the detection of rare cells is often missed by …

[HTML][HTML] Single-cell and Spatial Transcriptomics Clustering with an Optimized Adaptive K-Nearest Neighbor Graph

J Li, Y Shyr, Q Liu - bioRxiv, 2023 - ncbi.nlm.nih.gov
Single-cell and spatial transcriptomics have been widely used to characterize cellular
landscape in complex tissues. To understand cellular heterogeneity, one essential step is to …

[PDF][PDF] Improved imbalanced classification through convex space learning

S Bej - 2021 - rosdok.uni-rostock.de
Imbalanced datasets are abundant in several real-life classification problems where
Machine Learning (ML) finds its application. Such problems are characterised by classes …