Two decades of Martini: Better beads, broader scope

SJ Marrink, L Monticelli, MN Melo… - Wiley …, 2023 - Wiley Online Library
The Martini model, a coarse‐grained force field for molecular dynamics simulations, has
been around for nearly two decades. Originally developed for lipid‐based systems by the …

Martini 3: a general purpose force field for coarse-grained molecular dynamics

PCT Souza, R Alessandri, J Barnoud, S Thallmair… - Nature …, 2021 - nature.com
The coarse-grained Martini force field is widely used in biomolecular simulations. Here we
present the refined model, Martini 3 (http://cgmartini. nl), with an improved interaction …

Mutual diffusion of binary liquid mixtures containing methanol, ethanol, acetone, benzene, cyclohexane, toluene, and carbon tetrachloride

G Guevara-Carrion, T Janzen… - The Journal of …, 2016 - pubs.aip.org
Mutual diffusion coefficients of all 20 binary liquid mixtures that can be formed out of
methanol, ethanol, acetone, benzene, cyclohexane, toluene, and carbon tetrachloride …

The solution chemistry of mixing states probed via fluctuations: a direct description of inhomogeneity in mixing

K Nishikawa - Bulletin of the Chemical Society of Japan, 2021 - academic.oup.com
Radial distribution functions are commonly used to represent the structures of solutions,
which represent the probability of finding another atom in the shell at a distance r from the …

Kirkwood–Buff-derived force field for peptides and proteins: philosophy and development of KBFF20

EA Ploetz, S Karunaweera, N Bentenitis… - Journal of Chemical …, 2021 - ACS Publications
A new classical nonpolarizable force field, KBFF20, for the simulation of peptides and
proteins is presented. The force field relies heavily on the use of Kirkwood–Buff theory to …

Using Weak Aggregation for Solubilization and Separation

S Prévost, T Zemb - Neutrons, X-rays, and Light, 2025 - Elsevier
This chapter examines the experimental situations where insoluble molecules must be
dissolved or dispersed in water without relying on the addition of surfactants. The symmetric …

Mechanistic insights into the hydrolysis of 2-chloroethyl ethyl sulfide: the expanded roles of sulfonium salts

SY Bae, MD Winemiller - The Journal of Organic Chemistry, 2013 - ACS Publications
The hydrolysis of 2-chloroethyl ethyl sulfide has been examined in an effort to better
understand its mechanism under more concentrated conditions. Two salts formed during …

A Kirkwood–Buff force field for the aromatic amino acids

EA Ploetz, PE Smith - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
In a continuation of our efforts to develop a united atom non-polarizable protein force field
based upon the solution theory of Kirkwood and Buff ie, the Kirkwood–Buff Force Field …

Microstructures of negative and positive azeotropes

JJ Shephard, SK Callear, S Imberti… - Physical Chemistry …, 2016 - pubs.rsc.org
Azeotropes famously impose fundamental restrictions on distillation processes, yet their
special thermodynamic properties make them highly desirable for a diverse range of …

Convergence behaviour of solvation shells in simulated liquids

J Kalayan, RH Henchman - Physical Chemistry Chemical Physics, 2021 - pubs.rsc.org
A convenient way to analyse solvent structure around a solute is to use solvation shells,
whereby solvent position around the solute is discretised by the size of a solvent molecule …