Mechanisms of oncogene-induced replication stress: jigsaw falling into place

P Kotsantis, E Petermann, SJ Boulton - Cancer discovery, 2018 - AACR
Oncogene activation disturbs cellular processes and accommodates a complex landscape
of changes in the genome that contribute to genomic instability, which accelerates mutation …

A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression

K Skourti-Stathaki, NJ Proudfoot - Genes & development, 2014 - genesdev.cshlp.org
R loops are three-stranded nucleic acid structures that comprise nascent RNA hybridized
with the DNA template, leaving the nontemplate DNA single-stranded. R loops form naturally …

R loops: from transcription byproducts to threats to genome stability

A Aguilera, T García-Muse - Molecular cell, 2012 - cell.com
RNA: DNA hybrid structures known as R loops were thought to be rare byproducts of
transcription. In the last decade, however, accumulating evidence has pointed to a new view …

Transcription-mediated replication hindrance: a major driver of genome instability

B Gómez-González, A Aguilera - Genes & development, 2019 - genesdev.cshlp.org
Genome replication involves dealing with obstacles that can result from DNA damage but
also from chromatin alterations, topological stress, tightly bound proteins or non-B DNA …

[HTML][HTML] The mitochondrial genome: structure, transcription, translation and replication

JW Taanman - Biochimica et Biophysica Acta (BBA)-Bioenergetics, 1999 - Elsevier
Mitochondria play a central role in cellular energy provision. The organelles contain their
own genome with a modified genetic code. The mammalian mitochondrial genome is …

In D-loop: 40 years of mitochondrial 7S DNA

TJ Nicholls, M Minczuk - Experimental gerontology, 2014 - Elsevier
Given the tiny size of the mammalian mitochondrial genome, at only 16.5 kb, it is often
surprising how little we know about some of its molecular features, and the molecular …

RNA biogenesis and RNA metabolism factors as R-loop suppressors: a hidden role in genome integrity

R Luna, B Gómez-González… - Genes & …, 2024 - genesdev.cshlp.org
Genome integrity relies on the accuracy of DNA metabolism, but as appreciated for more
than four decades, transcription enhances mutation and recombination frequencies. More …

Mitochondrial DNA maintenance in vertebrates

GS Shadel, DA Clayton - Annual review of biochemistry, 1997 - annualreviews.org
The discovery that mutations in mitochondrial DNA (mtDNA) can be pathogenic in humans
has increased interest in understanding mtDNA maintenance. The functional state of mtDNA …

DNA replication and transcription in mammalian mitochondria

M Falkenberg, NG Larsson… - Annu. Rev. Biochem., 2007 - annualreviews.org
The mitochondrion was originally a free-living prokaryotic organism, which explains the
presence of a compact mammalian mitochondrial DNA (mtDNA) in contempory mammalian …

Human proteins that interact with RNA/DNA hybrids

IX Wang, C Grunseich, J Fox, J Burdick, Z Zhu… - Genome …, 2018 - genome.cshlp.org
RNA/DNA hybrids form when RNA hybridizes with its template DNA generating a three-
stranded structure known as the R-loop. Knowledge of how they form and resolve, as well as …