The emerging role of mass spectrometry-based proteomics in drug discovery

F Meissner, J Geddes-McAlister, M Mann… - Nature Reviews Drug …, 2022 - nature.com
Proteins are the main targets of most drugs; however, system-wide methods to monitor
protein activity and function are still underused in drug discovery. Novel biochemical …

Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications

XR Liu, MM Zhang, ML Gross - Chemical reviews, 2020 - ACS Publications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …

Mass spectrometry methods for measuring protein stability

DD Vallejo, C Rojas Ramírez, KF Parson, Y Han… - Chemical …, 2022 - ACS Publications
Mass spectrometry is a central technology in the life sciences, providing our most
comprehensive account of the molecular inventory of the cell. In parallel with developments …

Advances in hydrogen/deuterium exchange mass spectrometry and the pursuit of challenging biological systems

EI James, TA Murphree, C Vorauer, JR Engen… - Chemical …, 2021 - ACS Publications
Solution-phase hydrogen/deuterium exchange (HDX) coupled to mass spectrometry (MS) is
a widespread tool for structural analysis across academia and the biopharmaceutical …

Differential hydrogen/deuterium exchange mass spectrometry analysis of protein–ligand interactions

MJ Chalmers, SA Busby, BD Pascal… - Expert review of …, 2011 - Taylor & Francis
Functional regulation of ligand-activated receptors is driven by alterations in the
conformational dynamics of the protein upon ligand binding. Differential hydrogen/deuterium …

Protein analysis by hydrogen exchange mass spectrometry

AN Hoofnagle, KA Resing… - Annual review of …, 2003 - annualreviews.org
▪ Abstract Mass spectrometry has provided a powerful method for monitoring hydrogen
exchange of protein backbone amides with deuterium from solvent. In comparison to …

Pulse proteolysis: a simple method for quantitative determination of protein stability and ligand binding

C Park, S Marqusee - Nature methods, 2005 - nature.com
Thermodynamic stability is fundamental to the biology of proteins. Information on protein
stability is essential for studying protein structure and folding and can also be used indirectly …

Expanding the number of 'druggable'targets: non‐enzymes and protein–protein interactions

LN Makley, JE Gestwicki - Chemical biology & drug design, 2013 - Wiley Online Library
Following sequencing and assembly of the human genome, the preferred methods for
identification of new drug targets have changed dramatically. Modern tactics such as …

[HTML][HTML] Collision induced unfolding of protein ions in the gas phase studied by ion mobility-mass spectrometry: the effect of ligand binding on conformational stability

JTS Hopper, NJ Oldham - Journal of the American Society for Mass …, 2009 - Elsevier
Ion mobility spectrometry, with subsequent mass spectrometric detection, has been
employed to study the stability of compact protein conformations of FK-binding protein, hen …

A cell is more than the sum of its (dilute) parts: A brief history of quinary structure

RD Cohen, GJ Pielak - Protein Science, 2017 - Wiley Online Library
Most knowledge of protein structure and function is derived from experiments performed with
purified protein resuspended in dilute, buffered solutions. However, proteins function in the …