Examination of a protein's structural 'neighbors' can reveal distant evolutionary relationships
that are otherwise undetectable, and perhaps suggest unsuspected functional properties. In …

Recent advances in cryo-electron microscopy and single-particle reconstruction (collectively
referred to as 'cryoEM') have made it possible to determine the three-dimensional (3D) …

The present paper describes the SSM algorithm of protein structure comparison in three
dimensions, which includes an original procedure of matching graphs built on the protein's …

We represent a new method for finding all connected maximal common subgraphs in two
graphs which is based on the transformation of the problem into the clique problem. We …

Due to large sizes and complex nature, few large macromolecular complexes have been
solved to atomic resolution. This has lead to an under-representation of these structures …

Comparison of protein structures can reveal distant evolutionary relationships that would not
be detected by sequence information alone. This helps to infer functional properties. In …

This article investigates aspects of pairwise and multiple structure comparison, and the
problem of automatically discover common patterns in a set of structures. Descriptions and …

Abstract Characterization and identification of similar tertiary structure of proteins provides
rich information for investigating function and evolution. The importance of structure …

The tertiary structures of proteins have been solved in an increasing pace in recent years. To
capitalize the enormous efforts paid for accumulating the structure data, efficient and …

A bioinformatics method was developed to identify the protein surface around the functional
site and to estimate the biochemical function, using a newly constructed molecular surface …