Horizontal gene transfer and adaptive evolution in bacteria

BJ Arnold, IT Huang, WP Hanage - Nature Reviews Microbiology, 2022 - nature.com
Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial
evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can …

Marine microbial community dynamics and their ecological interpretation

JA Fuhrman, JA Cram, DM Needham - Nature Reviews Microbiology, 2015 - nature.com
Recent advances in studying the dynamics of marine microbial communities have shown
that the composition of these communities follows predictable patterns and involves complex …

Microbial invasions: the process, patterns, and mechanisms

CA Mallon, JD Van Elsas, JF Salles - Trends in microbiology, 2015 - cell.com
There has recently been a surge of literature examining microbial invasions into a variety of
environments. These studies often include a component of biological diversity as a major …

SAR11 bacteria: the most abundant plankton in the oceans

SJ Giovannoni - Annual review of marine science, 2017 - annualreviews.org
SAR11 is a group of small, carbon-oxidizing bacteria that reach a global estimated
population size of 2.4× 1028 cells—approximately 25% of all plankton. They are found …

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

J Wiedenbeck, FM Cohan - FEMS microbiology reviews, 2011 - academic.oup.com
Horizontal genetic transfer (HGT) has played an important role in bacterial evolution at least
since the origins of the bacterial divisions, and HGT still facilitates the origins of bacterial …

Population genomics of early events in the ecological differentiation of bacteria

BJ Shapiro, J Friedman, OX Cordero, SP Preheim… - science, 2012 - science.org
Genetic exchange is common among bacteria, but its effect on population diversity during
ecological differentiation remains controversial. A fundamental question is whether …

Microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity

JA Bryant, C Lamanna, H Morlon… - Proceedings of the …, 2008 - National Acad Sciences
The study of elevational diversity gradients dates back to the foundation of biogeography.
Although elevational patterns of plant and animal diversity have been studied for centuries …

The ecological coherence of high bacterial taxonomic ranks

L Philippot, SGE Andersson, TJ Battin… - Nature Reviews …, 2010 - nature.com
The species is a fundamental unit of biological organization, but its relevance for Bacteria
and Archaea is still hotly debated. Even more controversial is whether the deeper branches …

Dynamics in microbial communities: unraveling mechanisms to identify principles

A Konopka, S Lindemann, J Fredrickson - The ISME journal, 2015 - academic.oup.com
Diversity begets higher-order properties such as functional stability and robustness in
microbial communities, but principles that inform conceptual (and eventually predictive) …

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

ML Bendall, SLR Stevens, LK Chan, S Malfatti… - The ISME …, 2016 - academic.oup.com
Multiple models describe the formation and evolution of distinct microbial phylogenetic
groups. These evolutionary models make different predictions regarding how adaptive …