PFP-GO: Integrating protein sequence, domain and protein-protein interaction information for protein function prediction using ranked GO terms

K Sengupta, S Saha, AK Halder, P Chatterjee… - Frontiers in …, 2022 - frontiersin.org
Protein function prediction is gradually emerging as an essential field in biological and
computational studies. Though the latter has clinched a significant footprint, it has been …

Prediction of chromatin looping using deep hybrid learning (DHL)

M Chiliński, AK Halder, D Plewczynski - Quantitative Biology, 2023 - Wiley Online Library
Background With the development of rapid and cheap sequencing techniques, the cost of
whole‐genome sequencing (WGS) has dropped significantly. However, the complexity of …

DMLDA-LocLIFT: identification of multi-label protein subcellular localization using DMLDA dimensionality reduction and LIFT classifier

Q Zhang, S Li, B Yu, Q Zhang, Y Han, Y Zhang… - … and Intelligent Laboratory …, 2020 - Elsevier
Multi-label proteins occur in two or more subcellular locations, which play a vital role in cell
development and metabolism. Prediction and analysis of multi-label subcellular localization …

JUPPI: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment

AK Halder, SS Bandyopadhyay… - IEEE/ACM …, 2020 - ieeexplore.ieee.org
Over the years, several methods have been proposed for the computational PPI prediction
with different performance evaluation strategies. While attempting to benchmark …

RFCM-PALM: In-Silico Prediction of S-Palmitoylation Sites in the Synaptic Proteins for Male/Female Mouse Data

SS Bandyopadhyay, AK Halder… - International Journal of …, 2021 - mdpi.com
S-palmitoylation is a reversible covalent post-translational modification of cysteine thiol side
chain by palmitic acid. S-palmitoylation plays a critical role in a variety of biological …

Multi-level Feature-Based Subcellular Location Prediction of Apoptosis Proteins Check for updates

SS Bandyopadhyay, AK Halder… - … Conference on Data …, 2023 - books.google.com
Apoptosis is considered a vital component of various processes including normal cell
turnover, proper development and functioning of the immune system, hormone-dependent …

Multi-level Feature-Based Subcellular Location Prediction of Apoptosis Proteins

SS Bandyopadhyay, AK Halder, K Sengupta… - … Conference on Data …, 2022 - Springer
Apoptosis is considered a vital component of various processes including normal cell
turnover, proper development and functioning of the immune system, hormone-dependent …

Analysis of Large-Scale Human Protein Sequences Using an Efficient Spark-Based DBSCAN Algorithm

S Sekhar Bandyopadhyay, A Kumar Halder… - … Conference on Frontiers …, 2020 - Springer
The development of modern high throughput sequencing techniques has resulted in an
exponential growth in meta-genomic sequence accumulation that could greatly enhance …

[引用][C] Análisis bioinformático de la especificidad de las secuencias de aminoácidos de la LH murina y canina candidatas para inmunocontracepción

SA Reinoso González - 2019 - Quito