[HTML][HTML] Proteomics-based synapse characterization: From proteins to circuits

G Marcassa, D Dascenco, J de Wit - Current opinion in neurobiology, 2023 - Elsevier
The highly heterogeneous nature of neuronal cell types and their connections presents a
major challenge to the characterization of neural circuits at the protein level. New …

Creative approaches using proximity labeling to gain new biological insights

RR Milione, BB Schell, CJ Douglas… - Trends in Biochemical …, 2024 - cell.com
At its most fundamental level, life is a collection of synchronized cellular processes driven by
interactions among biomolecules. Proximity labeling has emerged as a powerful technique …

Photoproximity labeling of endogenous receptors in the live mouse brain in minutes

M Takato, S Sakamoto, H Nonaka… - Nature Chemical …, 2024 - nature.com
Understanding how protein–protein interaction networks in the brain give rise to cognitive
functions necessitates their characterization in live animals. However, tools available for this …

Defining the cell surface cysteinome using two-step enrichment proteomics

T Yan, LM Boatner, L Cui, PJ Tontonoz, KM Backus - JACS Au, 2023 - ACS Publications
The plasma membrane proteome is a rich resource of functionally important and
therapeutically relevant protein targets. Distinguished by high hydrophobicity, heavy …

Antibody-directed extracellular proximity biotinylation reveals that Contactin-1 regulates axo-axonic innervation of axon initial segments

Y Ogawa, BC Lim, S George, JA Oses-Prieto… - Nature …, 2023 - nature.com
Axon initial segment (AIS) cell surface proteins mediate key biological processes in neurons
including action potential initiation and axo-axonic synapse formation. However, few AIS cell …

Capture of the mouse organ membrane proteome specificity in peptidisc libraries

F Antony, Z Brough, Z Zhao… - Journal of Proteome …, 2024 - ACS Publications
Membrane proteins, particularly those on the cell surface, play pivotal roles in diverse
physiological processes, and their dysfunction is linked to a broad spectrum of diseases …

In vivo identification of astrocyte and neuron subproteomes by proximity-dependent biotinylation

JS Soto, Y Jami-Alahmadi, JA Wohlschlegel… - Nature …, 2024 - nature.com
The central nervous system (CNS) comprises diverse and morphologically complex cells. To
understand the molecular basis of their physiology, it is crucial to assess proteins expressed …

Cell-type-specific neuroproteomics of synapses

YY Yim, EJ Nestler - Biomolecules, 2023 - mdpi.com
In the last two decades, our knowledge of synaptic proteomes and their relationship to
normal brain function and neuropsychiatric disorders has been expanding rapidly through …

Revealing and mitigating the inhibitory effect of serotonin on HRP-mediated protein labelling

ZCK Chan, C Qi, Y Cai, X Li, J Ren - Scientific Reports, 2024 - nature.com
Proximity-dependent biotinylation coupled with mass spectrometry enables the
characterization of subcellular proteomes. This technique has significantly advanced …

Revealing protein trafficking by proximity labeling-based proteomics

Y Wang, W Qin - Bioorganic Chemistry, 2024 - Elsevier
Protein trafficking is a fundamental process with profound implications for both intracellular
and intercellular functions. Proximity labeling (PL) technology has emerged as a powerful …