Transcriptional architecture of the mammalian circadian clock

JS Takahashi - Nature Reviews Genetics, 2017 - nature.com
Circadian clocks are endogenous oscillators that control 24-hour physiological and
behavioural processes in organisms. These cell-autonomous clocks are composed of a …

Molecular architecture of the mammalian circadian clock

CL Partch, CB Green, JS Takahashi - Trends in cell biology, 2014 - cell.com
Circadian clocks coordinate physiology and behavior with the 24h solar day to provide
temporal homeostasis with the external environment. The molecular clocks that drive these …

Macromolecular assemblies of the mammalian circadian clock

RP Aryal, PB Kwak, AG Tamayo, M Gebert, PL Chiu… - Molecular cell, 2017 - cell.com
The mammalian circadian clock is built on a feedback loop in which PER and CRY proteins
repress their own transcription. We found that in mouse liver nuclei all three PERs, both …

Structural integration in hypoxia-inducible factors

D Wu, N Potluri, J Lu, Y Kim, F Rastinejad - Nature, 2015 - nature.com
The hypoxia-inducible factors (HIFs) coordinate cellular adaptations to low oxygen stress by
regulating transcriptional programs in erythropoiesis, angiogenesis and metabolism. These …

Interactions by disorder–a matter of context

K Bugge, I Brakti, CB Fernandes, JE Dreier… - Frontiers in Molecular …, 2020 - frontiersin.org
Living organisms depend on timely and organized interactions between proteins linked in
interactomes of high complexity. The recent increased precision by which protein …

[HTML][HTML] Molecular interactions between components of the circadian clock and the immune system

S Hergenhan, S Holtkamp, C Scheiermann - Journal of molecular biology, 2020 - Elsevier
The immune system is under control of the circadian clock. Many of the circadian rhythms
observed in the immune system originate in direct interactions between components of the …

[HTML][HTML] Core circadian clock genes regulate leukemia stem cells in AML

RV Puram, MS Kowalczyk, CG de Boer, RK Schneider… - Cell, 2016 - cell.com
Leukemia stem cells (LSCs) have the capacity to self-renew and propagate disease upon
serial transplantation in animal models, and elimination of this cell population is required for …

bHLH–PAS proteins in cancer

DC Bersten, AE Sullivan, DJ Peet… - Nature Reviews Cancer, 2013 - nature.com
Mammalian basic HLH (helix–loop–helix)–PER–ARNT–SIM (bHLH–PAS) proteins are
heterodimeric transcription factors that sense and respond to environmental signals (such as …

Circadian oscillators: around the transcription–translation feedback loop and on to output

JM Hurley, JJ Loros, JC Dunlap - Trends in biochemical sciences, 2016 - cell.com
From cyanobacteria to mammals, organisms have evolved timing mechanisms to adapt to
environmental changes in order to optimize survival and improve fitness. To anticipate these …

Class 3 PI3K coactivates the circadian clock to promote rhythmic de novo purine synthesis

C Alkhoury, NF Henneman, V Petrenko… - Nature Cell …, 2023 - nature.com
Metabolic demands fluctuate rhythmically and rely on coordination between the circadian
clock and nutrient-sensing signalling pathways, yet mechanisms of their interaction remain …