Cracking the code: reprogramming the genetic script in prokaryotes and eukaryotes to harness the power of noncanonical amino acids

C Jann, S Giofré, R Bhattacharjee, EA Lemke - Chemical Reviews, 2024 - ACS Publications
Over 500 natural and synthetic amino acids have been genetically encoded in the last two
decades. Incorporating these noncanonical amino acids into proteins enables many …

Playing with the molecules of life

DD Young, PG Schultz - ACS chemical biology, 2018 - ACS Publications
Our understanding of the complex molecular processes of living organisms at the molecular
level is growing exponentially. This knowledge, together with a powerful arsenal of tools for …

Designing logical codon reassignment–Expanding the chemistry in biology

A Dumas, L Lercher, CD Spicer, BG Davis - Chemical science, 2015 - pubs.rsc.org
Over the last decade, the ability to genetically encode unnatural amino acids (UAAs) has
evolved rapidly. The programmed incorporation of UAAs into recombinant proteins relies on …

Genetically programmed cell-based synthesis of non-natural peptide and depsipeptide macrocycles

M Spinck, C Piedrafita, WE Robertson, TS Elliott… - Nature …, 2023 - nature.com
The direct genetically encoded cell-based synthesis of non-natural peptide and
depsipeptide macrocycles is an outstanding challenge. Here we programme the encoded …

Engineering pyrrolysine systems for genetic code expansion and reprogramming

DL Dunkelmann, JW Chin - Chemical Reviews, 2024 - ACS Publications
Over the past 16 years, genetic code expansion and reprogramming in living organisms has
been transformed by advances that leverage the unique properties of pyrrolysyl-tRNA …

Expanding the enzyme universe with genetically encoded unnatural amino acids

I Drienovská, G Roelfes - Nature Catalysis, 2020 - nature.com
The emergence of robust methods to expand the genetic code allows incorporation of non-
canonical amino acids into the polypeptide chain of proteins, thus making it possible to …

Pyrrolysyl-tRNA synthetase: an ordinary enzyme but an outstanding genetic code expansion tool

W Wan, JM Tharp, WR Liu - Biochimica et Biophysica Acta (BBA)-Proteins …, 2014 - Elsevier
The genetic incorporation of the 22nd proteinogenic amino acid, pyrrolysine (Pyl) at amber
codon is achieved by the action of pyrrolysyl-tRNA synthetase (PylRS) together with its …

Genetic Encoding of Bicyclononynes and trans-Cyclooctenes for Site-Specific Protein Labeling in Vitro and in Live Mammalian Cells via Rapid Fluorogenic Diels …

K Lang, L Davis, S Wallace, M Mahesh… - Journal of the …, 2012 - ACS Publications
Rapid, site-specific labeling of proteins with diverse probes remains an outstanding
challenge for chemical biologists. Enzyme-mediated labeling approaches may be rapid but …

Expanding the substrate scope of pyrrolysyl-transfer RNA synthetase enzymes to include non-α-amino acids in vitro and in vivo

R Fricke, CV Swenson, LT Roe, NX Hamlish, B Shah… - Nature …, 2023 - nature.com
The absence of orthogonal aminoacyl-transfer RNA (tRNA) synthetases that accept non-l-α-
amino acids is a primary bottleneck hindering the in vivo translation of sequence-defined …

In vitro genetic code reprogramming for the expansion of usable noncanonical amino acids

T Katoh, H Suga - Annual Review of Biochemistry, 2022 - annualreviews.org
Genetic code reprogramming has enabled us to ribosomally incorporate various
nonproteinogenic amino acids (npAAs) into peptides in vitro. The repertoire of usable npAAs …