The genomic landscape of 85 advanced neuroendocrine neoplasms reveals subtype-heterogeneity and potential therapeutic targets

J van Riet, HJG van de Werken, E Cuppen… - Nature …, 2021 - nature.com
Metastatic and locally-advanced neuroendocrine neoplasms (aNEN) form clinically and
genetically heterogeneous malignancies, characterized by distinct prognoses based upon …

The proteogenomic landscape of curable prostate cancer

A Sinha, V Huang, J Livingstone, J Wang, NS Fox… - Cancer Cell, 2019 - cell.com
DNA sequencing has identified recurrent mutations that drive the aggressiveness of prostate
cancers. Surprisingly, the influence of genomic, epigenomic, and transcriptomic …

APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis

J Maciejowski, A Chatzipli, A Dananberg, K Chu… - Nature …, 2020 - nature.com
Chromothripsis and kataegis are frequently observed in cancer and may arise from telomere
crisis, a period of genome instability during tumorigenesis when depletion of the telomere …

Divergent mutational processes distinguish hypoxic and normoxic tumours

V Bhandari, CH Li, RG Bristow, PC Boutros - Nature communications, 2020 - nature.com
Many primary tumours have low levels of molecular oxygen (hypoxia), and hypoxic tumours
respond poorly to therapy. Pan-cancer molecular hallmarks of tumour hypoxia remain poorly …

Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy

M M. Naeini, F Newell, LG Aoude, VF Bonazzi… - Nature …, 2023 - nature.com
Oesophageal adenocarcinoma is a poor prognosis cancer and the molecular features
underpinning response to treatment remain unclear. We investigate whole genome …

The cytidine deaminase APOBEC3G contributes to cancer mutagenesis and clonal evolution in bladder cancer

W Liu, KP Newhall, F Khani, LM Barlow, D Nguyen… - Cancer Research, 2023 - AACR
Mutagenic processes leave distinct signatures in cancer genomes. The mutational
signatures attributed to APOBEC3 cytidine deaminases are pervasive in human cancers …

Genomic and transcriptomic landscape of human gastrointestinal stromal tumors

F Xie, S Luo, D Liu, X Lu, M Wang, X Liu, F Jia… - Nature …, 2024 - nature.com
Gastrointestinal stromal tumor (GISTs) are clinically heterogenous exhibiting varying
degrees of disease aggressiveness in individual patients. We comprehensively describe the …

Longitudinal profiling of circulating tumour DNA for tracking tumour dynamics in pancreatic cancer

L Sivapalan, GJ Thorn, E Gadaleta, HM Kocher… - BMC cancer, 2022 - Springer
Background The utility of circulating tumour DNA (ctDNA) for longitudinal tumour monitoring
in pancreatic ductal adenocarcinoma (PDAC) has not been explored beyond mutations in …

The cytidine deaminase APOBEC3G drives cancer mutagenesis and clonal evolution in bladder cancer

W Liu, KP Newhall, F Khani, LM Barlow, D Nguyen… - bioRxiv, 2022 - biorxiv.org
Mutagenic processes leave distinct signatures in cancer genomes. The mutational
signatures attributed to APOBEC3 cytidine deaminases are pervasive in human cancers …

A stress response that allows highly mutated eukaryotic cells to survive and proliferate

RA Zabinsky, J Mares, R She, MK Zeman, TR Silvers… - bioRxiv, 2019 - biorxiv.org
Rapid mutation fuels the evolution of many cancers and pathogens. Much of the ensuing
genetic variation is detrimental, but cells can survive by limiting the cost of accumulating …