Functional 5′ UTR mRNA structures in eukaryotic translation regulation and how to find them

K Leppek, R Das, M Barna - Nature reviews Molecular cell biology, 2018 - nature.com
RNA molecules can fold into intricate shapes that can provide an additional layer of control
of gene expression beyond that of their sequence. In this Review, we discuss the current …

Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements

LW Barrett, S Fletcher, SD Wilton - Cellular and molecular life sciences, 2012 - Springer
There is now compelling evidence that the complexity of higher organisms correlates with
the relative amount of non-coding RNA rather than the number of protein-coding genes …

Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression

DE Andreev, PBF O'Connor, C Fahey, EM Kenny… - elife, 2015 - elifesciences.org
Eukaryotic cells rapidly reduce protein synthesis in response to various stress conditions.
This can be achieved by the phosphorylation-mediated inactivation of a key translation …

The influence of LINE‐1 and SINE retrotransposons on mammalian genomes

SR Richardson, AJ Doucet, HC Kopera… - Mobile DNA …, 2015 - Wiley Online Library
Transposable elements (TEs) or “jumping genes” historically have been disparaged as a
class of “junk DNA” in mammalian genomes (1, 2). The advent of whole genome DNA …

LINE-1 elements in structural variation and disease

CR Beck, JL Garcia-Perez, RM Badge… - Annual review of …, 2011 - annualreviews.org
The completion of the human genome reference sequence ushered in a new era for the
study and discovery of human transposable elements. It now is undeniable that …

The impact of transposable elements on mammalian development

JL Garcia-Perez, TJ Widmann, IR Adams - Development, 2016 - journals.biologists.com
Despite often being classified as selfish or junk DNA, transposable elements (TEs) are a
group of abundant genetic sequences that have a significant impact on mammalian …

Engineered LINE-1 retrotransposition in nondividing human neurons

A Macia, TJ Widmann, SR Heras, V Ayllon… - Genome …, 2017 - genome.cshlp.org
Half the human genome is made of transposable elements (TEs), whose ongoing activity
continues to impact our genome. LINE-1 (or L1) is an autonomous non-LTR retrotransposon …

Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health

VP Belancio, DJ Hedges, P Deininger - Genome research, 2008 - genome.cshlp.org
Transposable elements (TEs) have shared an exceptionally long coexistence with their host
organisms and have come to occupy a significant fraction of eukaryotic genomes. The bulk …

Characterization of LINE-1 ribonucleoprotein particles

AJ Doucet, AE Hulme, E Sahinovic, DA Kulpa… - PLoS …, 2010 - journals.plos.org
The average human genome contains a small cohort of active L1 retrotransposons that
encode two proteins (ORF1p and ORF2p) required for their mobility (ie, retrotransposition) …

The current status of vertebrate cellular mRNA IRESs

RJ Jackson - Cold Spring Harbor perspectives in biology, 2013 - cshperspectives.cshlp.org
Internal ribosome entry sites/segments (IRESs) were first discovered over 20 years ago in
picornaviruses, followed by the discovery of two other types of IRES in hepatitis C virus …